View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_low_14 (Length: 267)
Name: NF2620_low_14
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 2602666 - 2602416
Alignment:
| Q |
5 |
caatcggaaccttgtcgacaaagaaattgtagggttatgtgtgcttgtgcatatgttgctcacaaaattgcttattttagtttcaataattcatgttaac |
104 |
Q |
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| T |
2602666 |
caatcggaaccttgtcgacaaagaaattgtagggt-atgtgtgcttgtgcatatgttactcacaaaattgcttattttagtttcaataattcatgttaac |
2602568 |
T |
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| Q |
105 |
aacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaacttgtcatatattgtcaaaaaagaaaacctgtcagtatgtatttaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602567 |
aacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaacttgtcatatattgtcaaaaaagaaaacctgtcagtatgtatttaat |
2602468 |
T |
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| Q |
205 |
tccttatccttttttctattttgtttgtttctctactattttcttcatcttc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602467 |
tccttatccttttttctattttgtttgtttctctactattttcttcatcttc |
2602416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 2595912 - 2595730
Alignment:
| Q |
63 |
ctcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaacttgt |
162 |
Q |
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| T |
2595912 |
ctcacaaaattgcttactttgatttcaacaattcatgttaaaaacctagcaatggtctgaaattggaaacaacttgcaaaatattccaa----------t |
2595823 |
T |
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| Q |
163 |
catatattgtcaaaaaagaaaacctgtcagtatgtatttaattccttatccttttttctattttgtttgtttctctactattttcttcatcttc |
256 |
Q |
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| T |
2595822 |
cataaattgtcaataaaaacaacttgtcaatatgtatgtatttcctcatcctttgct-aattctgtttgtttctctactattttcttcatcttc |
2595730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2581164 - 2581063
Alignment:
| Q |
63 |
ctcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaacttgt |
162 |
Q |
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|||||||||||||||| ||| |||||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||| |||||| || |||| |
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| T |
2581164 |
ctcacaaaattgcttactttgatttcaacaattcatgttaaaaacctagcaatggtctgaaattggaaacaacttgcaaaatattccaatcataaattgt |
2581065 |
T |
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| Q |
163 |
ca |
164 |
Q |
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|| |
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| T |
2581064 |
ca |
2581063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 2581011 - 2580981
Alignment:
| Q |
226 |
tgtttgtttctctactattttcttcatcttc |
256 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2581011 |
tgtttgtttctctactattttcttcatcttc |
2580981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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