View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_low_17 (Length: 251)
Name: NF2620_low_17
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 45270785 - 45270569
Alignment:
| Q |
19 |
gaaaaggcaaatgttaaagaataaaacactgacatgttattgtatacatactctttaaattattcttaaatgaccaatatatatttcttaatggagaaag |
118 |
Q |
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| T |
45270785 |
gaaaaggcaaatgttaaagaataaaacactgacatgttattgtatacatactctttaaattattcttaaatgaccaatatatatttcttaatggagaaag |
45270686 |
T |
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| Q |
119 |
atttggttgttgatgttgttggttatcaacttaattatgttttaagagccaaatgtttctttgcaacttaccagaagaaaatggtgctcaacgtatgatg |
218 |
Q |
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| T |
45270685 |
atttggttgttgatgttgttggttatcaacttaattatgttttaagagccaaatgtttctttgcaacttaccagaagaaaatggtgctcaacgtatgatg |
45270586 |
T |
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| Q |
219 |
cacccatgacaacaaca |
235 |
Q |
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| T |
45270585 |
cacccatgacaacaaca |
45270569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 17606295 - 17606245
Alignment:
| Q |
185 |
cttaccagaagaaaatggtgctcaacgtatgatgcacccatgacaacaaca |
235 |
Q |
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| T |
17606295 |
cttaccagaagaaaacggcgttcaacgtatgatgcacccatgacaacaaca |
17606245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 16873719 - 16873649
Alignment:
| Q |
165 |
agccaaatgtttctttgcaacttaccagaagaaaatggtgctcaacgtatgatgcacccatgacaacaaca |
235 |
Q |
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| T |
16873719 |
agccatatatttcattgtaacttaccagtagaaaatgatgtttaacgtatgatgcacgcatgacaacaaca |
16873649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 16863886 - 16863825
Alignment:
| Q |
174 |
tttctttgcaacttaccagaagaaaatggtgctcaacgtatgatgcacccatgacaacaaca |
235 |
Q |
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| T |
16863886 |
tttctttgcaacttaccacaagaaatcggtgttccacgtatgatgcgcgcatgacaacaaca |
16863825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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