View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_low_3 (Length: 397)
Name: NF2620_low_3
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 392
Target Start/End: Complemental strand, 10284678 - 10284317
Alignment:
| Q |
22 |
ttacaaaaattgtcttgtcgtgaata-ttttactagttgaaactaagctatataggtcaagaactgaattt-gatgcgctttactagtatcacaagaaat |
119 |
Q |
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| T |
10284678 |
ttacaaaaattgtcttgtcgtgaataattttactagttgaaactaagctatataactcaagaactgaattttgatgcgctttactagtatcacaagaaat |
10284579 |
T |
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| Q |
120 |
taacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcgcgatttattcaaccaacacaacatcaagatcata |
219 |
Q |
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| T |
10284578 |
taacttgattaattatttatgttgagaacttattgaagcaaatcgaaacttaaatatgatgcatcacgatttattcaaccaacaaaacatcaagatcata |
10284479 |
T |
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| Q |
220 |
gaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcacttacattcttatcataccaagagcattgtaaacaacttattgaa |
319 |
Q |
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| T |
10284478 |
gaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcactcacattcttatcataccaagagcattgtaaacaacttattgaa |
10284379 |
T |
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| Q |
320 |
atgaaaattacaagaatatatatcccttgtttaattagagtactatatatcccttatttaacatatattcttc |
392 |
Q |
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| T |
10284378 |
at-----------gaatatatatcccttgattaattagaaaactatatatctcttattcaacatattttcttc |
10284317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 392
Target Start/End: Complemental strand, 10265667 - 10265311
Alignment:
| Q |
22 |
ttacaaaaattgtcttgtcgtgaatattttactagttgaaactaagctatataggtcaagaactgaattt-gatgcgctttactagtatcacaagaaatt |
120 |
Q |
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| T |
10265667 |
ttacaaaaattgtcttgtcgtgaatattttactagttgaaactaagctatataactcaagaactgaattttgatgcgctttactagtctcacaagaaatt |
10265568 |
T |
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| Q |
121 |
aacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcgcgatttattcaaccaacacaacatcaagatcatag |
220 |
Q |
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| T |
10265567 |
aacttgatta----tttatgttgagaacttgttgaagcaaatcgaaaattaaatatgatgcatcacgatttattcaaccaacacaacatcaagatcatag |
10265472 |
T |
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| Q |
221 |
aatttttattcataatttggagaacaaaaacactatttcattctccgtttttcacttacattcttatcataccaagagcattgtaaacaacttattgaaa |
320 |
Q |
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| T |
10265471 |
aatttttattcataatttggagaacaaaaacactatttcattctccgtttttcactcacattcttatcataccaagagcattgtaaacaacttattgaaa |
10265372 |
T |
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| Q |
321 |
tgaaaattacaagaatatatatcccttgtttaattagagtactatatatcccttatttaacatatattcttc |
392 |
Q |
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| T |
10265371 |
t-----------gaatatatatcccttgattaattagaaaactaaatatctcttattcaacatattttcttc |
10265311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 342
Target Start/End: Complemental strand, 10255195 - 10255027
Alignment:
| Q |
177 |
gatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaa--acactattt-cattctccgtttttc |
273 |
Q |
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|||| ||| ||||||| ||||||||||||||||| | ||||||||| | ||||||||||||| || | |||| ||||||||| | ||||| ||||||| |
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| T |
10255195 |
gatgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataatttcgaatagaaaagcacactattttctttctctgtttttc |
10255096 |
T |
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| Q |
274 |
acttacattcttatcataccaagagcattgtaaacaacttattgaaatgaaaattacaagaatatatat |
342 |
Q |
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| T |
10255095 |
actcatattcttatcatagcaagagtattgtaaacaaagtattgaaatgaagattacatgaatatatat |
10255027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 10256099 - 10256054
Alignment:
| Q |
116 |
aaattaacttgattaattatttatgttgagaacttgttgaagcaaa |
161 |
Q |
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||||||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
10256099 |
aaattaacttggttagttatttatgttgagaacctgttgaagcaaa |
10256054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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