View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2620_low_6 (Length: 330)
Name: NF2620_low_6
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 38059082 - 38058776
Alignment:
| Q |
11 |
cataggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
38059082 |
cataggccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttgtaaatatcctttgcagcaagtgttctgttgagc |
38058983 |
T |
|
| Q |
111 |
aacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcag |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38058982 |
aacgtttcaagtggttcgtctttcggaaacccgtaaaggtaaagaactgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcag |
38058883 |
T |
|
| Q |
211 |
gaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatact |
310 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38058882 |
gaaacttctcttgcatcaagtgtatgagcttatctactcctccaagaaacaaggcttgaaatatagcttgtactgttgattttgacttcccctttatact |
38058783 |
T |
|
| Q |
311 |
tgaattt |
317 |
Q |
| |
|
||||||| |
|
|
| T |
38058782 |
tgaattt |
38058776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 38061372 - 38061678
Alignment:
| Q |
11 |
cataggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagc |
110 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||| |||||||| | | ||||||||||| ||||||||| |||||||||||||| || | |||||||||||| |
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|
| T |
38061372 |
catacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaatatcctttgcagcttgtgttctgttgagc |
38061471 |
T |
|
| Q |
111 |
aacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcag |
210 |
Q |
| |
|
||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || | |
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|
| T |
38061472 |
aacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctctaaccaaaccaagttctg |
38061571 |
T |
|
| Q |
211 |
gaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatact |
310 |
Q |
| |
|
||||||| |||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| || ||| |||| |
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|
| T |
38061572 |
gaaacttttctttcatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgacttaccttttttact |
38061671 |
T |
|
| Q |
311 |
tgaattt |
317 |
Q |
| |
|
| ||||| |
|
|
| T |
38061672 |
taaattt |
38061678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 38073413 - 38073133
Alignment:
| Q |
14 |
aggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagcaac |
113 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||| |||| |||||||||||||||||| ||||| || ||||||||||| |||| ||||||||||||||| |
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|
| T |
38073413 |
aggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttgcagctagtgttctgttgagcaac |
38073314 |
T |
|
| Q |
114 |
gtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaa |
213 |
Q |
| |
|
|||||||||| |||| ||| ||||||| | ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38073313 |
gtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaatcttctctaaccaaaccaagttcaggaa |
38073214 |
T |
|
| Q |
214 |
acttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttg |
294 |
Q |
| |
|
|||| |||| ||||||| | | ||| |||||||||| ||| |||||||||| |||||||| |||| ||||||||||||||| |
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|
| T |
38073213 |
acttttcttccatcaagggtaagaggttatctacacttcctagaaacaaggattgaaataaagctagtactgttgactttg |
38073133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 38086923 - 38086620
Alignment:
| Q |
14 |
aggccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaatatcctttgcacctagagttctgttgagcaac |
113 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||| | | ||||||||||||||| ||||| | ||||| || | || | |||||||| |||||| |
|
|
| T |
38086923 |
aggccatatgccttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttgaatatatcaagtgtagcttgtgttctgttaagcaac |
38086824 |
T |
|
| Q |
114 |
gtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaa |
213 |
Q |
| |
|
|||| ||| |||| |||||| | ||| ||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
38086823 |
acttcaggtgtagaaccttttggaaactgaaaaaagtaaagaacagattcaatccaactcatttcaatacaatattctctaaccaaaccaagctcaggaa |
38086724 |
T |
|
| Q |
214 |
acttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttga |
313 |
Q |
| |
|
|||||||||| | |||| | ||||| ||||||||||||||||||||||| |||||||||| | || |||| | ||||||||||| || ||| ||||||| |
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|
| T |
38086723 |
acttctcttgaaccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttga |
38086624 |
T |
|
| Q |
314 |
attt |
317 |
Q |
| |
|
|||| |
|
|
| T |
38086623 |
attt |
38086620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 38082492 - 38082222
Alignment:
| Q |
17 |
ccatattccttctaatccaatttcaggaatgggaaatttgacaaaatcagattttactttgtaaata--tcct-------ttgcacctagagttctgttg |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| || | ||||| |||| |||||||| |
|
|
| T |
38082492 |
ccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttgtaaataaatcttgggctgtttgcagctagtgttctgtta |
38082393 |
T |
|
| Q |
108 |
agcaacgtttcaagtgattcgtctttcggaaacccataaaggtaaagaaccgattcaacccaactcatctcaacacaatcttctctaaccaaaccaagct |
207 |
Q |
| |
|
|||||| |||| || || | |||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||| |||| ||| | || |
|
|
| T |
38082392 |
agcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgaccacacccaact |
38082293 |
T |
|
| Q |
208 |
caggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaaacaaggcttgaaatatagct |
278 |
Q |
| |
|
|||||||||| | | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38082292 |
caggaaacttttgatccatcaagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagct |
38082222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 38078103 - 38077992
Alignment:
| Q |
187 |
cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctcc-aagaaacaaggcttgaaatatagcttgtactg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||| || ||||||||||| ||||| |||| |||||| |
|
|
| T |
38078103 |
cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagggcatgagttcatctacacctccaaaaaaacaaggcttaaaataaagctagtactg |
38078004 |
T |
|
| Q |
286 |
ttgactttgact |
297 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38078003 |
ttgactttgact |
38077992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 37954593 - 37954488
Alignment:
| Q |
159 |
gattcaacccaactcatctcaacacaatcttctctaaccaaaccaagctcaggaaacttctcttgcatcaagtgaatgagcttatctacacctccaagaa |
258 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| | || || ||||||||||||||||| |
|
|
| T |
37954593 |
gattcaatccaactcatctcagtacaatcttctctaaccaaaccaagctctggaaactcctcttccatcaaggggataagtccatctacacctccaagaa |
37954494 |
T |
|
| Q |
259 |
acaagg |
264 |
Q |
| |
|
|||||| |
|
|
| T |
37954493 |
acaagg |
37954488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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