View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2620_low_8 (Length: 327)
Name: NF2620_low_8
Description: NF2620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2620_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 50275585 - 50275274
Alignment:
| Q |
1 |
cagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275585 |
cagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctc |
50275486 |
T |
|
| Q |
101 |
aaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttc |
200 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50275485 |
aaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttc |
50275386 |
T |
|
| Q |
201 |
aatggccaagctttccagactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaatt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275385 |
aatggccaagctttccacactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaatt |
50275286 |
T |
|
| Q |
301 |
gagagtgataac |
312 |
Q |
| |
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|||||||||||| |
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| T |
50275285 |
gagagtgataac |
50275274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 50279609 - 50279298
Alignment:
| Q |
1 |
cagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279609 |
cagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctc |
50279510 |
T |
|
| Q |
101 |
aaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttc |
200 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50279509 |
aaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttc |
50279410 |
T |
|
| Q |
201 |
aatggccaagctttccagactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaatt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279409 |
aatggccaagctttccacactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaatt |
50279310 |
T |
|
| Q |
301 |
gagagtgataac |
312 |
Q |
| |
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|||||||||||| |
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| T |
50279309 |
gagagtgataac |
50279298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
79 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctc |
146 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||| |
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| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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