View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_10 (Length: 421)
Name: NF2621_high_10
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 12895048 - 12894680
Alignment:
| Q |
16 |
acggaaggagtataataaatcaatcaatctcgacgtggattaattgctttagttgttttcagttgaggatttaatatttaagtggtacatggggtggcat |
115 |
Q |
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| T |
12895048 |
acggagggagtataataaatcaatcaatctcgacgtggatgaattgctttagttgctttgagttgaggatttaatatttaagtggtacatcgggtggcat |
12894949 |
T |
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| Q |
116 |
aaactttgtggttcacttctttaattgaggatcaattcttgtctaatcaagtgtatagttttcnnnnnnnncaataatcaaatgtatagttaaaatattc |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12894948 |
aaactttgtggtccacttctttaattgaggatcaattcttgtctaatcaagtgtatagttttcttttttttcaataatcaaatgtatagttaaaatattc |
12894849 |
T |
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| Q |
216 |
aacaaaagtaagtttaacgcgatgcaaaaaaacaatttccgtnnnnnnnncgtgacacaaaatttnnnnnnnnnnnnnntatgtgtatatattacaaaaa |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
12894848 |
aacaaaagtaagtttaacgcgatgc-aaaaaacaatttccgt-aaaataacgtgacacaaaattt--cacacacacacatatgtgtatatattacaaaaa |
12894753 |
T |
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| Q |
316 |
catggtgagggatggggtctggaataaggtattggaatatctcaaacctaaaatatgatataagattttgctc |
388 |
Q |
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|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12894752 |
catggtcagggatggggtctgaaataaggtattggaatttctcaaacctaaaatatgatataagattttgctc |
12894680 |
T |
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