View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2621_high_12 (Length: 407)

Name: NF2621_high_12
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2621_high_12
NF2621_high_12
[»] scaffold0096 (1 HSPs)
scaffold0096 (292-373)||(27923-28004)
[»] chr1 (9 HSPs)
chr1 (292-369)||(8170449-8170526)
chr1 (292-369)||(4795981-4796058)
chr1 (292-369)||(25659036-25659113)
chr1 (292-343)||(11523223-11523274)
chr1 (271-326)||(46614467-46614522)
chr1 (271-312)||(43361437-43361478)
chr1 (271-311)||(30721798-30721838)
chr1 (291-343)||(30725807-30725860)
chr1 (292-343)||(41318522-41318574)
[»] scaffold0060 (1 HSPs)
scaffold0060 (296-369)||(67753-67826)
[»] chr7 (7 HSPs)
chr7 (292-369)||(2430656-2430733)
chr7 (292-338)||(37566316-37566362)
chr7 (293-341)||(48402628-48402676)
chr7 (291-341)||(42271103-42271153)
chr7 (271-307)||(34996758-34996794)
chr7 (289-341)||(37031323-37031375)
chr7 (292-343)||(41816654-41816706)
[»] chr4 (9 HSPs)
chr4 (292-369)||(49233224-49233301)
chr4 (271-353)||(6447103-6447185)
chr4 (271-369)||(45781824-45781920)
chr4 (294-369)||(49889279-49889354)
chr4 (292-375)||(53921887-53921970)
chr4 (271-348)||(8281456-8281533)
chr4 (292-353)||(30658108-30658170)
chr4 (271-307)||(470108-470144)
chr4 (271-307)||(52399285-52399321)
[»] chr3 (9 HSPs)
chr3 (292-369)||(43747819-43747896)
chr3 (292-369)||(46235433-46235510)
chr3 (292-369)||(38888339-38888416)
chr3 (271-343)||(24087997-24088070)
chr3 (271-338)||(49952145-49952212)
chr3 (292-369)||(5175562-5175640)
chr3 (292-341)||(34672603-34672652)
chr3 (291-343)||(13848908-13848961)
chr3 (292-343)||(8319968-8320020)
[»] chr5 (7 HSPs)
chr5 (292-362)||(7529793-7529863)
chr5 (292-369)||(35467956-35468033)
chr5 (294-369)||(9269568-9269645)
chr5 (271-327)||(33084626-33084683)
chr5 (292-343)||(35468279-35468330)
chr5 (272-309)||(27878687-27878724)
chr5 (293-341)||(11447198-11447246)
[»] chr8 (8 HSPs)
chr8 (292-369)||(26747893-26747970)
chr8 (292-361)||(27631614-27631683)
chr8 (292-361)||(24100736-24100805)
chr8 (291-348)||(43638369-43638427)
chr8 (292-348)||(9990890-9990947)
chr8 (271-300)||(33449342-33449371)
chr8 (271-307)||(30266011-30266047)
chr8 (271-307)||(43638422-43638458)
[»] chr2 (4 HSPs)
chr2 (271-369)||(5077182-5077275)
chr2 (271-307)||(3462684-3462720)
chr2 (271-307)||(4681569-4681605)
chr2 (292-343)||(8588501-8588553)
[»] chr6 (1 HSPs)
chr6 (292-343)||(27899082-27899133)


Alignment Details
Target: scaffold0096 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 28004 - 27923
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28004 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttataatt 27923  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 8170449 - 8170526
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8170449 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttat 8170526  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 4795981 - 4796058
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4795981 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataaaacaacattataatttat 4796058  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 25659036 - 25659113
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25659036 agagaaatagaagagaaagaaatgatattatttttaaaaagacaaaaatatctttgataagacaacattataatttat 25659113  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 11523223 - 11523274
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 343  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  11523223 agagaaatagaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 11523274  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 46614522 - 46614467
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattattttt 326  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||  ||||||||    
T  46614522 tttgatgtgttgtttggtttaagagaaatagaagagagagaagtgtgtttattttt 46614467  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 43361478 - 43361437
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaa 312  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  43361478 tttgatgtattgtttggtttaagagaaaaagaagagagagaa 43361437  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 30721798 - 30721838
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagaga 311  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  30721798 tttgatgtatggtttggtataagagaaatggaagagagaga 30721838  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 30725860 - 30725807
Alignment:
Q  291 aagagaaatagaagagagagaaatgttatta-tttttaaaaagacaaaaatatc 343  Q
    ||||||||||||||||| ||||||||  ||| ||||||||||||| ||||||||    
T  30725860 aagagaaatagaagagaaagaaatgtgtttagtttttaaaaagaccaaaatatc 30725807  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 41318522 - 41318574
Alignment:
Q  292 agagaaatagaagagagagaaatgttattat-ttttaaaaagacaaaaatatc 343  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||||||    
T  41318522 agagaaatagaagagaaagaagtgtgtttatattttaaaaagacaaaaatatc 41318574  T

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Target: scaffold0060 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 67826 - 67753
Alignment:
Q  296 aaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  67826 aaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacaatataatttat 67753  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 2430656 - 2430733
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2430656 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttaataagacaacattataatttat 2430733  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 37566316 - 37566362
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaa 338  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||    
T  37566316 agagaaatagaagagaaagaaatgtgattattttttaaaagacaaaa 37566362  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 48402628 - 48402676
Alignment:
Q  293 gagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 341  Q
    |||||||||||||||||||||||   |||||||||||| ||||||||||    
T  48402628 gagaaatagaagagagagaaatgcatttatttttaaaaggacaaaaata 48402676  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 42271103 - 42271153
Alignment:
Q  291 aagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 341  Q
    ||||||||||||||||| |||| |||  |||||||||||||||| ||||||    
T  42271103 aagagaaatagaagagaaagaagtgtgtttatttttaaaaagactaaaata 42271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 34996794 - 34996758
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    |||||||||||||||||||||||||| | ||||||||    
T  34996794 tttgatgtattgtttggtataagagagaaagaagaga 34996758  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 37031323 - 37031375
Alignment:
Q  289 ataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 341  Q
    |||||||||||||||||||||||| |||  ||| |||| || |||||||||||    
T  37031323 ataagagaaatagaagagagagaattgtgtttactttttaatagacaaaaata 37031375  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 41816654 - 41816706
Alignment:
Q  292 agagaaatagaagagagagaaatgttatt-atttttaaaaagacaaaaatatc 343  Q
    ||||||||||||||||||||| |||  || ||| |||||||||||||||||||    
T  41816654 agagaaatagaagagagagaagtgtgcttaattcttaaaaagacaaaaatatc 41816706  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 49233301 - 49233224
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49233301 agagaaatagaagagaaacaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttat 49233224  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 6447103 - 6447185
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataaga 353  Q
    |||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  6447103 tttgatgtattgtttggtataagagaaagaagagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataaga 6447185  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 45781920 - 45781824
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||| |||  ||||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||    
T  45781920 tttgatgtattgtttgatataagaaaaa--gaagagaaagaaatgttattatttttaaaaagtcaaaaatatccttgataagataacattacaatttat 45781824  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 49889279 - 49889354
Alignment:
Q  294 agaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49889279 agaaatagaagagaaataaatgctattatttttaaaaagacaaaaatatctttgataagacaacattataatttat 49889354  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 53921970 - 53921887
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataattta 375  Q
    |||||||||||||| | | ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||| |||||    
T  53921970 agagaaatagaagaaaaaaaaatgttattattttcaaaaggataaaaatatccttgataagacaacattataatttatgattta 53921887  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 8281533 - 8281456
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattga 348  Q
    |||||||| ||| | ||||||||||||||| || ||| | | |||||||||||||||||| |||||||||||| ||||    
T  8281533 tttgatgtgttgatcggtataagagaaatataaaagaaaaatatgttattatttttaaaaggacaaaaatatctttga 8281456  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 30658170 - 30658108
Alignment:
Q  292 agagaaatagaagagagagaaatgttattattttt-aaaaagacaaaaatatcattgataaga 353  Q
    |||||||||||||| | ||| |||||||| ||||| ||||||||||||||||| |||||||||    
T  30658170 agagaaatagaagataaagagatgttattgttttttaaaaagacaaaaatatccttgataaga 30658108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 470144 - 470108
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    |||||||||||||||||||||||||||  ||||||||    
T  470144 tttgatgtattgtttggtataagagaatgagaagaga 470108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 52399321 - 52399285
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  52399321 tttgatgtagtgtttggtataagagaaagagaagaga 52399285  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 43747819 - 43747896
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  43747819 agagaaatagaagagaaagaaatgttattatttttaaaaaaacaaaaatatccttgataagacaacattataatttat 43747896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 46235510 - 46235433
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  46235510 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacatcattataatttat 46235433  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 38888416 - 38888339
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  38888416 agagaaatagaagagaaagaaatgttgttatttttaaaaagataaaaatatccttgataagacaacattataatttat 38888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 24088070 - 24087997
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttatta-tttttaaaaagacaaaaatatc 343  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||| ||  | ||||||||||||||||||||||    
T  24088070 tttgatggattgtttggtataagagaaatagaagagaaagagatgctacaattttttaaaaagacaaaaatatc 24087997  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 49952212 - 49952145
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaa 338  Q
    |||||||  ||||||| |||||||||||||||||||| |||| ||| ||||||||| |||||||||||    
T  49952212 tttgatgagttgtttgatataagagaaatagaagagaaagaagtgtaattattttttaaaagacaaaa 49952145  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 5175640 - 5175562
Alignment:
Q  292 agagaaatagaagagagagaaatgttattattt-ttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    ||||||||| ||| || |||| | ||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||    
T  5175640 agagaaatacaagtgaaagaagtattattatttattaaaaagataaaaataactttgataagacaacattataatttat 5175562  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 34672652 - 34672603
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 341  Q
    |||||||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  34672652 agagaaatagaagagaaagaagtgtgattattttttaaaagacaaaaata 34672603  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 13848908 - 13848961
Alignment:
Q  291 aagagaaatagaagagagagaaatgt-tattatttttaaaaagacaaaaatatc 343  Q
    |||||||||||||||||||||| ||| | | |||| ||||||||||||||||||    
T  13848908 aagagaaatagaagagagagaagtgtgtttaatttgtaaaaagacaaaaatatc 13848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 8319968 - 8320020
Alignment:
Q  292 agagaaatagaagagagagaaatgttatt-atttttaaaaagacaaaaatatc 343  Q
    |||||||||||||||| |||||| |||||  ||||| ||||||||||||||||    
T  8319968 agagaaatagaagagaaagaaatattattgttttttgaaaagacaaaaatatc 8320020  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 7529793 - 7529863
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattat 362  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7529793 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattat 7529863  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 35468033 - 35467956
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35468033 agagaaatagaagagaaagaaatgctattatttttaaaaagacaaaaatatccttgataaaacaacattataatttat 35467956  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 9269568 - 9269645
Alignment:
Q  294 agaaatagaagagagagaaatgttattattttt--aaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||| | | ||||||||||||||||  | ||| |||||||||   |||||||||||||||||||||||||    
T  9269568 agaaatagaagataaataaatgttattatttttttataaaaacaaaaataatcttgataagacaacattataatttat 9269645  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 33084626 - 33084683
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgtt-attattttta 327  Q
    |||||||||||||||||| ||||||||||| |||||| ||||| ||| ||||||||||    
T  33084626 tttgatgtattgtttggtttaagagaaataaaagagaaagaaacgttaattattttta 33084683  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 35468279 - 35468330
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 343  Q
    |||||||| |||||||||||| |||  ||| |||||||||||||||||||||    
T  35468279 agagaaatggaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 35468330  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 27878687 - 27878724
Alignment:
Q  272 ttgatgtattgtttggtataagagaaatagaagagaga 309  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  27878687 ttgatgtattgtttgatataagagagatagaagagaga 27878724  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 11447246 - 11447198
Alignment:
Q  293 gagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 341  Q
    |||||||||||||||||||||||   |||||||| ||| ||||||||||    
T  11447246 gagaaatagaagagagagaaatgcatttatttttgaaaggacaaaaata 11447198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 26747970 - 26747893
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  26747970 agagaaatagaagagaaagaaatgttattattttttaaaagacaaaaatatccttgataagacaacattctaatttat 26747893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 27631614 - 27631683
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacatta 361  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  27631614 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttaataagataacatta 27631683  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 24100736 - 24100805
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacatta 361  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||  |||||||||||| ||||    
T  24100736 agagaaatagaaaagaaagaaatgttattatttttaaaaacacaaaaatattcttgataagacaagatta 24100805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 43638427 - 43638369
Alignment:
Q  291 aagagaaatagaagagagagaaatgttattat-ttttaaaaagacaaaaatatcattga 348  Q
    |||||||||||||||||| || |||||||||| || |||||||||||||||||| ||||    
T  43638427 aagagaaatagaagagagtgagatgttattatattctaaaaagacaaaaatatccttga 43638369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 9990890 - 9990947
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttt-taaaaagacaaaaatatcattga 348  Q
    |||||||||||||||| ||| || ||||| |||| |||||||||||||||||| ||||    
T  9990890 agagaaatagaagagaaagagatattattgttttttaaaaagacaaaaatatccttga 9990947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 33449342 - 33449371
Alignment:
Q  271 tttgatgtattgtttggtataagagaaata 300  Q
    ||||||||||||||||||||||||||||||    
T  33449342 tttgatgtattgtttggtataagagaaata 33449371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 30266047 - 30266011
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  30266047 tttgatgtagtgtttggtataagagaaagagaagaga 30266011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 43638458 - 43638422
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    |||||||||||||||||||||||||||| | ||||||    
T  43638458 tttgatgtattgtttggtataagagaaagaaaagaga 43638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 5077182 - 5077275
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 369  Q
    ||||||||||||||||||||||||||||  ||||||| | ||||   |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5077182 tttgatgtattgtttggtataagagaaa--gaagagaaaaaaat---attatttttaaaaagacaaaaatatccttgataagacaacatcataatttat 5077275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 3462684 - 3462720
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  3462684 tttgatgtagtgtttggtataagagaaagagaagaga 3462720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 4681569 - 4681605
Alignment:
Q  271 tttgatgtattgtttggtataagagaaatagaagaga 307  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  4681569 tttgatgtgttgtttggtataagagagatagaagaga 4681605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 8588501 - 8588553
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatt-tttaaaaagacaaaaatatc 343  Q
    |||||||||||||||| ||| |||||| |||| ||||||||||||| ||||||    
T  8588501 agagaaatagaagagaaagagatgttactattctttaaaaagacaataatatc 8588553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 27899082 - 27899133
Alignment:
Q  292 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 343  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  27899082 agagaaatagaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 27899133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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