View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_18 (Length: 336)
Name: NF2621_high_18
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 39642329 - 39642004
Alignment:
| Q |
11 |
cacagatcctatattctagttcagttcacgatggcttctttcacctgctccgcctccgacctcaacgctctcctcggcagcggtgcaaattccacagccg |
110 |
Q |
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| T |
39642329 |
cacagatcctatattctagttcagttcacgatggcttctttcacctgctccgcctccgacctcaacactctcctcggcagtggtgcaaattccacagccg |
39642230 |
T |
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| Q |
111 |
ctgccgaatacatctgcaacggctttaatgccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttacct |
210 |
Q |
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| T |
39642229 |
ctgccgaatacatctgcaacggctttaatgccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttacct |
39642130 |
T |
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| Q |
211 |
tgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgcagcc |
310 |
Q |
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| T |
39642129 |
tgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgcagcc |
39642030 |
T |
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| Q |
311 |
acaggcggcctctttttctatatttt |
336 |
Q |
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| T |
39642029 |
acaggcggcatctttttctatatttt |
39642004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 41 - 306
Target Start/End: Complemental strand, 46670496 - 46670231
Alignment:
| Q |
41 |
atggcttctttcacctgctccgcctccgacctcaacgctctcctcggcagcggtgcaaattccacagccgctgccgaatacatctgcaacggctttaatg |
140 |
Q |
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| T |
46670496 |
atggctactttcacctgttccgcctccgacctccacgctctcctcggcggaagcgcaaactccacagccgctgccgaatacatctgtggcggcttcaatg |
46670397 |
T |
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| Q |
141 |
ccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccat |
240 |
Q |
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| T |
46670396 |
ccgtcgcaaacaaattcatcgacacttcctatgctgtcgacaacacttaccttctattctcagcttaccttgtttttgccatgcaactaggttttgctat |
46670297 |
T |
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| Q |
241 |
gctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgc |
306 |
Q |
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| T |
46670296 |
gctttgtgccggttctgttcgtgccaaaaacactatgaacattatgttaaccaatgttcttgatgc |
46670231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 17091441 - 17091317
Alignment:
| Q |
176 |
gttgacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacacca |
275 |
Q |
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| T |
17091441 |
gttgacaacacctatcttttattctcagcttaccttgtcttctctatgcaacttggttttgccatgctctgtgctggttcagttcgtgctaagaacacca |
17091342 |
T |
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| Q |
276 |
tgaatattatgttaaccaatgttct |
300 |
Q |
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| T |
17091341 |
tgaacatcatgctcacaaatgttct |
17091317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 35416432 - 35416308
Alignment:
| Q |
179 |
gacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatga |
278 |
Q |
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| T |
35416432 |
gacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggtttcgctatgctctgcgctggctccgttcgagccaaaaacactatga |
35416333 |
T |
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| Q |
279 |
atattatgttaaccaatgttcttga |
303 |
Q |
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| T |
35416332 |
acatcatgctcaccaatgtccttga |
35416308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 25545202 - 25545082
Alignment:
| Q |
188 |
taccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgt |
287 |
Q |
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| T |
25545202 |
taccttctcttctctacctacttagtctttgtaatgcaactaggctttgccatgatatgtgcaggatctgtccgtgccaaaaatgccatgaacataatgc |
25545103 |
T |
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| Q |
288 |
taaccaatgttcttgatgcag |
308 |
Q |
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| T |
25545102 |
tcaccaatgtagttgatgcag |
25545082 |
T |
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