View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_20 (Length: 307)
Name: NF2621_high_20
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 94 - 301
Target Start/End: Complemental strand, 7589092 - 7588889
Alignment:
| Q |
94 |
gttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaaggttaacacttaatcataatatatatgtactgtacatagagatacgcaagaaa |
193 |
Q |
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| T |
7589092 |
gttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaaggttaacacttaatcataatatatatgtactgtacatagaggtacgcaagaaa |
7588993 |
T |
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| Q |
194 |
gataaagaaattagtgtggttagttatatatgctcctattttgacagtacttgtgaatgatattgatgggttaattaggtggtttcattttcttttgatt |
293 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7588992 |
gataaagaaattagtgtggttagt----tatgctcctattttgacagtacttgtgaatgatattgatgggttaattaggtggtttcattttcttctgatt |
7588897 |
T |
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| Q |
294 |
ctcttttg |
301 |
Q |
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|||||||| |
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| T |
7588896 |
ctcttttg |
7588889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 13653142 - 13653225
Alignment:
| Q |
57 |
tattaagatttgtttagggagattgagtcatttttctgttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaa |
140 |
Q |
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| T |
13653142 |
tattaagatttgtatagaaagattgtgtcatttttctgttcacgtgcacatgaaaatcagaagaaaaataataataacaaagaa |
13653225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 13661267 - 13661350
Alignment:
| Q |
57 |
tattaagatttgtttagggagattgagtcatttttctgttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaa |
140 |
Q |
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| T |
13661267 |
tattaagatttgtatagaaagattgtgtcatttttctgttcacgtgcacatgaaaatcagaagaaaaataataataacaaagaa |
13661350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 22635613 - 22635495
Alignment:
| Q |
49 |
taaaagtttattaagatttgtttagggagattgagtcat---ttttctgttcacgtgcacatgcaaaa-taaaagaaacataatgataacaaagaaggtt |
144 |
Q |
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|||| ||||||||| ||||| ||||| |||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| ||||||||||| | |
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| T |
22635613 |
taaaggtttattaaaatttgcttaggaagattgagtcatttcttttctgttcaagtgcacctgcaaaacaaaaagaaagataataataacaaagaaaatg |
22635514 |
T |
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| Q |
145 |
aacacttaatcataatata |
163 |
Q |
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|| |||||||||| ||||| |
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| T |
22635513 |
aagacttaatcattatata |
22635495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 3189077 - 3189005
Alignment:
| Q |
49 |
taaaagtttattaagatttgtttagggagattgagtcat---ttttctgttcacgtgcacatgcaaaataaaa |
118 |
Q |
| |
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|||| ||||||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
3189077 |
taaaggtttattaaaatttgcttaggaagattgagtcatttcttttctgttcaagtgcacatgcaaaacaaaa |
3189005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 25101538 - 25101421
Alignment:
| Q |
49 |
taaaagtttattaagatttgtttagggagattgagtcattt---ttctgttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaaggtta |
145 |
Q |
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|||| |||||| || ||||| ||||| |||||||||||||| ||||||||| |||||| |||||| |||||||| ||||| ||||||||||| | | |
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| T |
25101538 |
taaaggtttatcaaaatttgcttaggaagattgagtcatttcttttctgttcaagtgcacctgcaaaccaaaagaaagataataataacaaagaaaatga |
25101439 |
T |
|
| Q |
146 |
acacttaatcataatata |
163 |
Q |
| |
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| |||||||||| ||||| |
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| T |
25101438 |
agacttaatcattatata |
25101421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 25160631 - 25160514
Alignment:
| Q |
49 |
taaaagtttattaagatttgtttagggagattgagtcattt---ttctgttcacgtgcacatgcaaaataaaagaaacataatgataacaaagaaggtta |
145 |
Q |
| |
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|||| |||||| || ||||| ||||| |||||||||||||| ||||||||| |||||| |||||| |||||||| ||||| ||||||||||| | | |
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| T |
25160631 |
taaaggtttatcaaaatttgcttaggaagattgagtcatttcttttctgttcaagtgcacctgcaaaccaaaagaaagataataataacaaagaaaatga |
25160532 |
T |
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| Q |
146 |
acacttaatcataatata |
163 |
Q |
| |
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| |||||||||| ||||| |
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| T |
25160531 |
agacttaatcattatata |
25160514 |
T |
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