View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_22 (Length: 297)
Name: NF2621_high_22
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 31704063 - 31704324
Alignment:
| Q |
17 |
attgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtg |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
31704063 |
attgcagtggatattgcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagggaaagtg |
31704162 |
T |
|
| Q |
117 |
attgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | | |
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| T |
31704163 |
attgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtacttgcag |
31704262 |
T |
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| Q |
217 |
gaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
278 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31704263 |
gaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactac |
31704324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 31684752 - 31685009
Alignment:
| Q |
21 |
cagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtgattg |
120 |
Q |
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|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||| || |
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| T |
31684752 |
cagtggatattgcatgattggaatgacgaggaatgtgtaaagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaagggaaggtggtta |
31684851 |
T |
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| Q |
121 |
tgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaa |
220 |
Q |
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| | |||| ||| || || |||||||||| || |||||| |||||||||||||| |||||||||||||||||||| |||||||||||| | | ||||| |
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| T |
31684852 |
tcttcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgtttatgatggtagtatttgcaggaaa |
31684951 |
T |
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| Q |
221 |
agagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684952 |
agagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
31685009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 31735419 - 31735680
Alignment:
| Q |
17 |
attgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtg |
116 |
Q |
| |
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|||| |||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| || || |
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| T |
31735419 |
attgtagtggatattgcatgactggaatgacgaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggta |
31735518 |
T |
|
| Q |
117 |
attgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactg |
216 |
Q |
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|| | |||||||||||||| || ||||||||| | || ||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
31735519 |
gttatcatagacatggtgttagattgtgagaagggagacaataatgaatcggttgaaacaaaactcttctttgatatgttgatgatggtaacactcaccg |
31735618 |
T |
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| Q |
217 |
gaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
278 |
Q |
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|||||||||||| | ||||||||||| |||| |||||||| || || |||||| |||||||| |
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| T |
31735619 |
gaaaagagagaaccaagaaagaatgggttaaattgatttcttcggccggtttttgtgactac |
31735680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 31712473 - 31712734
Alignment:
| Q |
17 |
attgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtg |
116 |
Q |
| |
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||||||||||||||||||||||||||| || ||| ||||| |||| || |||||||||||||| ||||||||| |||||||||||||| |||| || || |
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| T |
31712473 |
attgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggta |
31712572 |
T |
|
| Q |
117 |
attgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactg |
216 |
Q |
| |
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|| | |||||||||||||| || ||||||||| | || ||| |||||||||||||| |||||||||||||||||||||||||||| || | || | |
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| T |
31712573 |
gttatcatagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatggccctattaacag |
31712672 |
T |
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| Q |
217 |
gaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
278 |
Q |
| |
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||||||||||||| ||||| |||||||| || |||||||| | |||||||||| ||||||| |
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| T |
31712673 |
gaaaagagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactac |
31712734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 31715402 - 31715642
Alignment:
| Q |
19 |
tgcagtggatattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtgat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||| ||||||||||| |||||||||||| |||| || ||||| |
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| T |
31715402 |
tgcagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgat |
31715501 |
T |
|
| Q |
119 |
tgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactgga |
218 |
Q |
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| | |||||||||||| |||| | ||||||| || || | ||||| | | |||| |||||||||||||||||| | |||||||| | ||| ||| |
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| T |
31715502 |
tatcatagacatggtggtggagaaagagaagggaaacagt---gaatcggctaaaacacaactcttctttgatatgctcatgatggtgttggccaccgga |
31715598 |
T |
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| Q |
219 |
aaagagagaaacgagaaagaatggattaagttgatttcctctgc |
262 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||||||| |
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| T |
31715599 |
aaagagagaaccaagaaagaatgggttaagttgatttcctctgc |
31715642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 30570921 - 30571168
Alignment:
| Q |
28 |
tattgcatgattggaatgatgaggaatgtgtgaaaatattaaagaattgtaaagatgcaatagcaaagaaaggtaaacaagggaaagtgattgtgataga |
127 |
Q |
| |
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|||| ||||| ||||| ||||||||||| |||||||| ||||||| || || || ||||||| ||| ||||||||| ||||||||||||| | ||||| |
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| T |
30570921 |
tattacatgactggaacgatgaggaatgcttgaaaatactaaagaaatgcaaggaagcaataggaaacaaaggtaaagaagggaaagtgataatcataga |
30571020 |
T |
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| Q |
128 |
catggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagaga |
227 |
Q |
| |
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| ||| ||| | |||||||||| | || |||||| ||||| | ||| | |||| |||| || ||||||||| | ||| ||||||||||||| |
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| T |
30571021 |
cgcagtgatggggaatgagaaggaagac---aatgaatcaattgaagcacaattgttctatgatttggagatgatggtgttggtcaatggaaaagagaga |
30571117 |
T |
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| Q |
228 |
aacgagaaagaatggattaagttgatttcctctgctggttttagtgactac |
278 |
Q |
| |
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|| || ||||||||| ||| ||| ||| ||||||||||||||| ||||| |
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| T |
30571118 |
aatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactac |
30571168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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