View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2621_high_23 (Length: 294)

Name: NF2621_high_23
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2621_high_23
NF2621_high_23
[»] chr1 (2 HSPs)
chr1 (15-278)||(14889725-14889988)
chr1 (15-278)||(14884074-14884337)
[»] chr7 (8 HSPs)
chr7 (51-273)||(27249101-27249326)
chr7 (15-269)||(27304425-27304676)
chr7 (51-273)||(27243132-27243354)
chr7 (51-272)||(27220260-27220478)
chr7 (219-273)||(27271610-27271664)
chr7 (219-273)||(27281721-27281775)
chr7 (174-269)||(27301568-27301663)
chr7 (219-273)||(27296189-27296243)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 14889725 - 14889988
Alignment:
Q  15 ggcaggaagattgagtttgggattggccacaatgattttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtctta 114  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889725 ggcaggaagattgagtttgggattggccacaatggatttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtctta 14889824  T
Q  115 actccattgcaacatggttcagggggagggggtggacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtg 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889825 accccattgcaacatggttcagggggagggggtggacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtg 14889924  T
Q  215 cagaattggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttggtaag 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889925 cagaattggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttggtaag 14889988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 14884074 - 14884337
Alignment:
Q  15 ggcaggaagattgagtttgggattggccacaatgattttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtctta 114  Q
    ||||| || |||||||||||| ||  ||||||||  ||| ||||||  |||||||||| ||  |||||   |||||  |  |||| ||| ||||||||||    
T  14884074 ggcagaaatattgagtttggggttctccacaatgggtttaaggcaatagcaaacatcttgaatatcttcaggagttttgatttggccatctaaagtctta 14884173  T
Q  115 actccattgcaacatggttcagggggagggggtggacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtg 214  Q
       |||||||||||||| ||||||||||||||||||||||| | | | | ||| |||  |||||||||||||||||||||||||| |||||||||||| |    
T  14884174 tacccattgcaacatgggtcagggggagggggtggacctgggtttgttaggtacggaatgcatggtgctaaagtttgttgcacttgaggacatgaagggg 14884273  T
Q  215 cagaattggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttggtaag 278  Q
    |||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  14884274 cagaattggctattggaatgcccaaaaccaagcataacatagccaaacaagtaaccttggtaag 14884337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 27249326 - 27249101
Alignment:
Q  51 tttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtcttaactccattgcaacatggttcagggggag---ggggt 147  Q
    |||||||||||||||||||||||||||||||||   ||||  || |||| ||||||||||||||||  ||||||||||||||   |||||||    ||||    
T  27249326 tttgaggcaaccgcaaacatctcgacgatcttgggtagttttggattggccatttaaagtcttaaccgcattgcaacatggtggtgggggagagatgggt 27249227  T
Q  148 ggacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtgcagaattggccagtggaatgctcaaaaccaagc 247  Q
    |||||||| ||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||| |||||| ||||    
T  27249226 ggacctgggtgtgttacgtacggaacgcatggtgctaaagtttgttgcacttcaggacatgaaggagcagcattagctagtggaatgcccaaaactaagc 27249127  T
Q  248 atatcatagccaaacaagtaaccttg 273  Q
    ||||||||||||||||||||||||||    
T  27249126 atatcatagccaaacaagtaaccttg 27249101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 27304676 - 27304425
Alignment:
Q  15 ggcaggaagattgagtttgggattggccacaatgattttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtctta 114  Q
    ||||||||||||||||||| |||||| ||  |||  ||||||||||||||||||||||||||||||| |  ||||| ||| |||| ||| ||||||||||    
T  27304676 ggcaggaagattgagtttgagattggtcatcatggatttgaggcaaccgcaaacatctcgacgatctaggggagtttgggattggccatgtaaagtctta 27304577  T
Q  115 actccattgcaacatggttcagggggagggggtggacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtg 214  Q
    |  ||||||||||||||||||||||||   |||  |  ||| | | ||  |||  ||  ||||| || |||||||||||||||| ||||||||||||| |    
T  27304576 atcccattgcaacatggttcaggggga---ggtccatgtgggtttgtcgcgtacagaaggcatgttgttaaagtttgttgcactgcaggacatgaagggg 27304480  T
Q  215 cagaattggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaac 269  Q
    ||| | |||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  27304479 cagcactggctagtggaatgcccaaaaccaagcatatcatagccaagcaagtaac 27304425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 27243354 - 27243132
Alignment:
Q  51 tttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtcttaactccattgcaacatggttcagggggagggggtgga 150  Q
    ||||| ||||| ||||  |||||||||||||||  ||||  ||| |||| ||| || || ||||||  |||||||||||||||||||||||||||||| |    
T  27243354 tttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagccttaaccgcattgcaacatggttcagggggagggggtgaa 27243255  T
Q  151 cctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtgcagaattggccagtggaatgctcaaaaccaagcata 250  Q
    ||||| ||| | | |||   |  |||||||| |||||||||||  | ||||||||||||||  |||| |||||| |||||||||| ||||||||||||||    
T  27243254 cctgggtgtgttacgtactcaaggcatggtgttaaagtttgttcaatttcaggacatgaagcggcagcattggctagtggaatgcccaaaaccaagcata 27243155  T
Q  251 tcatagccaaacaagtaaccttg 273  Q
    |||||||||||||||||||||||    
T  27243154 tcatagccaaacaagtaaccttg 27243132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 272
Target Start/End: Complemental strand, 27220478 - 27220260
Alignment:
Q  51 tttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtcttaactccattgcaacatggttcagggggagggggtgga 150  Q
    ||||||||||||||||||||   ||||||||||   ||||  |||||||  ||||||||||||||| | |||||||||||||| ||||||||    ||||    
T  27220478 tttgaggcaaccgcaaacatgatgacgatcttgcgtagttttggcttggctatttaaagtcttaaccctattgcaacatggttgagggggaga---tgga 27220382  T
Q  151 cctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtgcagaattggccagtggaatgctcaaaaccaagcata 250  Q
    ||||| | |   | ||  |||  |||||||| ||||||||||  |||| ||||||||||||| |||| |||||| | |||||||| ||||||||||||||    
T  27220381 cctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggacatgaaggggcagcattggctaatggaatgcccaaaaccaagcata 27220282  T
Q  251 tcatagccaaacaagtaacctt 272  Q
    ||||||||||||||||||||||    
T  27220281 tcatagccaaacaagtaacctt 27220260  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 27271664 - 27271610
Alignment:
Q  219 attggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttg 273  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27271664 attggctagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttg 27271610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 27281775 - 27281721
Alignment:
Q  219 attggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttg 273  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27281775 attggctagtggaatgcccaaaaccaagcatatcatagccaaacaagtaaccttg 27281721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 27301663 - 27301568
Alignment:
Q  174 gcatggtgctaaagtttgttgcacttcaggacatgaaggtgcagaattggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaac 269  Q
    |||||||| |||| |||||| |||||||  ||||| | ||| || |||||| | |||||||| |||||||||||||||||||||||| ||||||||    
T  27301663 gcatggtgttaaattttgtttcacttcatcacatgtaagtgaagcattggctaatggaatgcacaaaaccaagcatatcatagccaagcaagtaac 27301568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 27296243 - 27296189
Alignment:
Q  219 attggccagtggaatgctcaaaaccaagcatatcatagccaaacaagtaaccttg 273  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  27296243 attggctagtggaatgcccaaaaccaagcatatcgtagccaaacaagtaaccttg 27296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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