View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_26 (Length: 287)
Name: NF2621_high_26
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 111 - 272
Target Start/End: Complemental strand, 36156030 - 36155872
Alignment:
| Q |
111 |
aaaataaaaaataattgagttagagttaaatttcctatttatattccactaaacatgcaaaatcttatctctattgaattcttctcactttttgcaacaa |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36156030 |
aaaataaaaattaattgagttagagttaaatttcctatttttattctactaaacaagcaaaatcttatctctattgaatttttctcactttttgcaacaa |
36155931 |
T |
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| Q |
211 |
acaacgtgttattctttttaaccgatctatttgaacattattttccctctctccctcatttt |
272 |
Q |
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| T |
36155930 |
aca---tgttattctttttaaccgatctatttgaacattattttccctctctccctcatttt |
36155872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 36156315 - 36156193
Alignment:
| Q |
13 |
aatatcttatagctactatttgtcttcaactatatatataagaaaataacatacataaattatcaaactaacccaa-tttaattaactgacacataagta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| |
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| T |
36156315 |
aatatcttatagctactatttgtcttcaactatatatttaagaaaataacatacataaattatcaaactaacccaattttaattatctaactcataagta |
36156216 |
T |
|
| Q |
112 |
aaataaaaaataattgagttaga |
134 |
Q |
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| T |
36156215 |
aaataaaaattaattgagttaga |
36156193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 36429636 - 36429589
Alignment:
| Q |
68 |
taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
115 |
Q |
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| T |
36429636 |
taaactatcaaactaacccaatttaatcaactgatacataagcaaaat |
36429589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 5100816 - 5100883
Alignment:
| Q |
44 |
atatatataagaaaataacatac---ataaattatcaaactaacccaatttaattaactgacacataa |
108 |
Q |
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|||||| || ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||| |
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|
| T |
5100816 |
atatatttaggaaaataacataccccataaattatcaaattaatcatatttaattaactgacacataa |
5100883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 19997214 - 19997140
Alignment:
| Q |
43 |
tatatatataagaaaataacataca---taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
115 |
Q |
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|
| T |
19997214 |
tatatatataagaaaataa-atagaagataaattatcaaattaaccaaatttaattaactgacgcataagcaaaat |
19997140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 8901547 - 8901625
Alignment:
| Q |
38 |
tcaactatatatataagaaaataacat---acataaattatcaaactaacccaatttaattaactgacacataagtaaaat |
115 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
8901547 |
tcaattatatatttaagaaaataacatgcaacataaattatcaaactaa--aaatttaattagttgacacataagcaaaat |
8901625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 8915393 - 8915454
Alignment:
| Q |
38 |
tcaactatatatataagaaaataacatacataaattatcaaactaacccaatttaattaact |
99 |
Q |
| |
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|||| ||||||| ||| |||||||||||||| |||||| ||||| || ||| |||||||||| |
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| T |
8915393 |
tcaattatatatttaataaaataacatacatgaattatgaaacttactcaaattaattaact |
8915454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 44473669 - 44473637
Alignment:
| Q |
199 |
tttttgcaacaaacaacgtgttattctttttaa |
231 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
44473669 |
tttttgtaacaaacaacgtgttattctttttaa |
44473637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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