View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2621_high_4 (Length: 506)
Name: NF2621_high_4
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 6005040 - 6004573
Alignment:
| Q |
1 |
acaagatgttctagcatgtagtacggcatcttgactcatggtggtgtaccatatttcgcaaactttgaagtaatggttttcacatatattctagaatctt |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
6005040 |
acaagatgttctagcatgtagtacgacatcttgactcatggtggtgtaccatatttcgcatactttggagtaatggttttcacatatattctagaatctt |
6004941 |
T |
|
| Q |
101 |
ttagttaaattatttgtgctccaagaaacgtgtgtttctagatggttcatgtgttgtcacttttggtaattcttatgcctcaagattggaaactatttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6004940 |
ttagttaaattatttgtgctccaagaaacgtgtgtttctagatggttcatgtgctgtcacttttggtaattcttacgcctcaagattggaaactatttcg |
6004841 |
T |
|
| Q |
201 |
agaaagatttgatatgaaattatgttttggacagctgaagtgttttagctcattgaagaaaaagcccatgcagaacaatgactctaagaaatattgaacc |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6004840 |
agaaagatttgatatgaaattatgttttggacagctgaagtgttttagctcattgaagaaaaagcccatgcagaacaatgactct--------------- |
6004756 |
T |
|
| Q |
301 |
ttaataacaagtatcgaagttgtcattgaagattagagttttagggtttcgttgttttgagtctttgtgttttgtatacctctctatgtgtcgccattca |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6004755 |
----taacaagtatcgaagtcgtcattgaagattagagttttagggtttcgttgttttgagtctttgtgttttgtatacctctctatgtgccgccattca |
6004660 |
T |
|
| Q |
401 |
ttatcaaagtcgtagagatgggttgttttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6004659 |
ttatcaaagtcgtagagatgggttgttttagttgagttgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttt |
6004573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 30581532 - 30582009
Alignment:
| Q |
1 |
acaagatgttctagcatgtagtacggcatcttgactcatggtggtgtaccatatttcgcaaactttgaagtaatggttttcacatatattctagaatctt |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| | |||||||||| ||| |
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|
| T |
30581532 |
acaagatgttctagcatgtagtatgacatcttgactcaaggtggtgtaccgtatttcgcatactttggggtaatggttttcacgtgtattctagaagctt |
30581631 |
T |
|
| Q |
101 |
ttagttaaattatttgtgctccaagaaacgtgtgtttctagatggttcatgtgttgtcacttttggtaattcttatgcctcaagattggaaactatttcg |
200 |
Q |
| |
|
| | |||||||| ||||||||||| || ||||||| ||||||||||||||||| | || |||| ||||||||| |||||| |||||||||||||||| |
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|
| T |
30581632 |
tga-ttaaattacttgtgctccaaaaagcgtgtgtgtctagatggttcatgtgctctcggttttagtaattcttgcgcctcatgattggaaactatttca |
30581730 |
T |
|
| Q |
201 |
agaaagatttgatatgaaattatgttttggacagctgaagtgttttagctcattgaagaaaaagcccatgcagaacaatgac--tctaagaaatattgaa |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| ||||||||||| | ||||||||||||| ||||||| |||||| | | |||| || | | || |
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|
| T |
30581731 |
agaaagatttgatatgaaaatatgttttggacaactggagtgttttagccctttgaagaaaaagctcatgcaggacaatggctatataaggaagagtcaa |
30581830 |
T |
|
| Q |
299 |
ccttaataacaagtatcgaagttgtcattgaagattagagttttagggtttcgttgttttgagtctttgtgttttgtatacctctctatgtgtcgccatt |
398 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||| || |
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|
| T |
30581831 |
ccctaataacaagtatcgaagttgtcattgaagattagagttttaaggtttcgttgttttgagtc--tgtgttt----tacctctctatgtaccgccttt |
30581924 |
T |
|
| Q |
399 |
cattatcaaagtcgtagagatgggttgttttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttg |
483 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||| ||| || |||||||||| ||||| || ||||||||| |||||||| |
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|
| T |
30581925 |
gattatcaaagtcttagagatggtttgttttaattgagttgtaatgtgtctttgtattccactctaatgcatctagtaagagttg |
30582009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 221 - 470
Target Start/End: Complemental strand, 24810834 - 24810583
Alignment:
| Q |
221 |
tatgttttggacagctgaagtgttttagctcattgaagaaaaagcccatgcagaacaatgactctaagaa--atattgaaccttaataacaagtatcgaa |
318 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||| | || || | | | ||| ||||||||||||| ||| |
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|
| T |
24810834 |
tatgttttggatagctgaagtgttttaacccattgaagaaaaattccatgtagaacaatggttatataaagaagactcaacgctaataacaagtattgaa |
24810735 |
T |
|
| Q |
319 |
gttgtcattgaagattagagttttagggtttcgttgttttgagtctttgtgttttgtatacctctctatgtgtcgccattcattatcaaagtcgtagaga |
418 |
Q |
| |
|
|| |||||| ||||||| |||| ||||||||| ||||||||||||| ||| |||||||| ||||||||||||| | |||| |||||||||| | |||||| |
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|
| T |
24810734 |
gtcgtcattaaagattacagttatagggtttcattgttttgagtctctgtcttttgtatgcctctctatgtgttgtcattgattatcaaagccttagaga |
24810635 |
T |
|
| Q |
419 |
tgggttgttttagttgagctgtgatttgtctttgtacaccactttagtgcat |
470 |
Q |
| |
|
|| |||||||||||||| ||| |||||| ||||| |||||| || ||||| |
|
|
| T |
24810634 |
tgatttgttttagttgagttgtaatttgtgtttgtttaccactataatgcat |
24810583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 17882085 - 17882045
Alignment:
| Q |
447 |
tctttgtacaccactttagtgcatctagcaagagttggttt |
487 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| |||| |
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|
| T |
17882085 |
tctttgtataccactttagtgcatctagcaagtgttagttt |
17882045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 252 - 420
Target Start/End: Original strand, 9375344 - 9375514
Alignment:
| Q |
252 |
attgaagaaaaagcccatgcagaacaatgactcta--agaaatattgaaccttaataacaagtatcgaagttgtcattgaagattagagttttagggttt |
349 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || || || ||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||| | |
|
|
| T |
9375344 |
attgaagaaaaagctcatgcagaacaaagactatataaggaagattcaaccttaataacaagtattgaagtcgtcattgaagatttgagttttagggtat |
9375443 |
T |
|
| Q |
350 |
cgttgttttgagtctttgtgttttgtatacctctctatgtgtcgccattcattatcaaagtcgtagagatg |
420 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
9375444 |
cattgttttgagtctttgtgttttgcatacctctctatgaaccgccattgattatcaaagtcttagagatg |
9375514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 9375537 - 9375569
Alignment:
| Q |
456 |
accactttagtgcatctagcaagagttggtttt |
488 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
9375537 |
accactctagtgcatctagcaagagttggtttt |
9375569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 13280796 - 13280852
Alignment:
| Q |
317 |
aagttgtcattgaagattagagttttagggtttcgttgttttgagtctttgtgtttt |
373 |
Q |
| |
|
|||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13280796 |
aagtcgtcattgaagaattgagttttagagtttcgttgttttgagtctttgtgtttt |
13280852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 487
Target Start/End: Complemental strand, 13484118 - 13484003
Alignment:
| Q |
370 |
ttttgtatacctctctatgtgtcgccattcattatcaaagtcgtagagatgggttgttttagttgagctgtgatttgtctttgtacaccactttagtgca |
469 |
Q |
| |
|
||||||||| ||||||||||| | |||| ||||||||| | ||||||||| |||||| ||||||| ||| |||| |||||||| |||||| ||||| |
|
|
| T |
13484118 |
ttttgtatatctctctatgtgatgtcattgattatcaaatta-tagagatggtttgttt-agttgagttgtaatttctctttgtataccactctagtgat |
13484021 |
T |
|
| Q |
470 |
tctagcaagagttggttt |
487 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13484020 |
tttagcaagagttggttt |
13484003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 54287305 - 54287243
Alignment:
| Q |
427 |
tttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttttg |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| || |||||||||| |||||||| ||||||| |
|
|
| T |
54287305 |
tttagttgagttgtgatttgtctttgtagaccgctctagtgcatcttgcaagagtaggttttg |
54287243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 55359443 - 55359310
Alignment:
| Q |
8 |
gttctagcatgtagtacggcatcttgactcatggtggtgtaccatatttcgcaaactttgaagtaatggttttcacatatattctagaatcttttagtta |
107 |
Q |
| |
|
|||||| |||||| |||| ||| |||| || || |||||||||| ||||||| ||||| ||||||| || || ||||||||| |||| ||||| || | |
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|
| T |
55359443 |
gttctatcatgtaatacgacattttgagccaaggcggtgtaccatttttcgcattctttggagtaatgtttctcgcatatattcaagaagctttt-gtca |
55359345 |
T |
|
| Q |
108 |
aattatttgtgctccaagaaacgtgtgtttctaga |
142 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||| |
|
|
| T |
55359344 |
tattacttgtgcttcaagaaacgtgcttttctaga |
55359310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 55359200 - 55359145
Alignment:
| Q |
228 |
tggacagctgaagtgttttagctcattgaagaaaaagcccatgcagaacaatgact |
283 |
Q |
| |
|
|||||| ||| | ||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
55359200 |
tggacaactggattgtgttagcccattgaagaaaaagctcatgcagaacaatgact |
55359145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 24510832 - 24510772
Alignment:
| Q |
427 |
tttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttt |
487 |
Q |
| |
|
|||||||||| ||| |||||| |||||| |||||| | |||| |||||||||||||||||| |
|
|
| T |
24510832 |
tttagttgagttgtaatttgtttttgtataccactctggtgcttctagcaagagttggttt |
24510772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 24550252 - 24550192
Alignment:
| Q |
427 |
tttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttt |
487 |
Q |
| |
|
||||||| || ||| ||||||||||||| |||||| |||||| |||||||| ||||||||| |
|
|
| T |
24550252 |
tttagttaagttgtaatttgtctttgtataccactctagtgcttctagcaaaagttggttt |
24550192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 487
Target Start/End: Complemental strand, 35656308 - 35656144
Alignment:
| Q |
326 |
ttgaagattagagttttagggtttcgttgtttt-gagtctttgtgttttgta-tacctctctat-gtgtcgccattcattatcaaagtcgtagagatggg |
422 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| |||||||| |||||| | || || |||| |||| || | | ||||||||| | |||| ||| |
|
|
| T |
35656308 |
ttgaagaattgagttttagggtttcgttgtttttgagtctttttgttttattgtatttcgctatagtgttgctactgattatcaaaagcttagaattggt |
35656209 |
T |
|
| Q |
423 |
ttgttttagttgagctgtgatttgtctttgtacaccactttagtgcatctagcaagagttggttt |
487 |
Q |
| |
|
|| ||||||||||| ||| |||||||||| || |||||| || ||||||| | |||||||||||| |
|
|
| T |
35656208 |
ttattttagttgagttgtaatttgtctttttataccactctaatgcatctggtaagagttggttt |
35656144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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