View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_high_6 (Length: 452)
Name: NF2621_high_6
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 42365555 - 42365990
Alignment:
| Q |
1 |
atgtagtgagaaacatggtcaaaccaaagatagctaaaacagtagtatttactgaccagattcttcatttcgaaaagcatagaagtcatgagcaaccatt |
100 |
Q |
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| T |
42365555 |
atgtagtgagaaacatggtcaaaccaaagatagctaaaacagtagtatttactgaccagattcttcatttcgaaaagcatagaagtcatgagcaaccatt |
42365654 |
T |
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| Q |
101 |
tccaactggtcaattgcttcaaacacagttaaaggaggcatgtcgaagtattttgtccgaacaacctgtaaaacagcctcacaactagagtaagtgcaat |
200 |
Q |
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| T |
42365655 |
tccaactggtcaattgcttcaaacacagttaaaggaggcatgtcgaagtattttgtccgaacaacctgtaaaacagcctcacaactagagtaagtgcaat |
42365754 |
T |
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| Q |
201 |
gtaaggaaaataaacaataaataacaaaacaacagcagaatctattgataagtaatgatatatcatcaatcaacataaatagtgtaagagcaaactgcaa |
300 |
Q |
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| T |
42365755 |
gtaaggaaaataaacaataaataacaaaacagcagcagcatctcttgataagtaatgatatatcatcaatcaacataaacagtgtaagagcaaactgcaa |
42365854 |
T |
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| Q |
301 |
atctacttccaaacgtgaaattgaagtttttctaatcagtttgcaggataattttcagttatatttctagaatgacacagcctaatatgatacttctagc |
400 |
Q |
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| T |
42365855 |
atctacttccaaacgtgaaattgaagtttttctaatcagtttggaggataattttcaattatatttctagaatgacacagcctaatatgatacttctagc |
42365954 |
T |
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| Q |
401 |
tacataatgattaatatcaacaattaaggtaccaac |
436 |
Q |
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| T |
42365955 |
tacataatgattaatatcaacaattaaggtaccaac |
42365990 |
T |
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