View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_11 (Length: 415)
Name: NF2621_low_11
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 865417 - 865796
Alignment:
| Q |
20 |
taagattctctcatttgtgattttgacatttttgttatatgtaggcactaaggttctatggaagtgatggtgtaagtgtgagtggtataaccattcaaaa |
119 |
Q |
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| T |
865417 |
taagattctatcatatgtgattttgacatttttgttatatgtaggcactaaggttctatggaagtgatggtgtaagtgtgagtggtataaccattcaaaa |
865516 |
T |
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| Q |
120 |
cagtcaacaaacccatctcaaatttgattcatgcacaaatgttcaagtctttgatataacaacttcatcacctggtgatagtcctaacacagatggaatt |
219 |
Q |
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| T |
865517 |
cagtcaacaaacccatctcaaatttgattcatgcacaaatgttcaagtctttgatataacaacttcatcacctggtgatagtcctaacacagatggaatt |
865616 |
T |
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| Q |
220 |
cacctacaaaattctcaagatgtgctcatctatagtagcacacttagttgtggtaagaatttcacaaaatgtgtatgagtttcctagaagaattgaattg |
319 |
Q |
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| T |
865617 |
cacctacaaaattctcaagatgtggtcatatctggcagcacacttagttgtggtaagaatttcacaaaatttgaatgagttttctagaagaattgaattg |
865716 |
T |
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| Q |
320 |
aacacatttcatgatgtatcatttcttcatcatgtaggagatgattgtgtatctatacaaactggatgttccaatatatt |
399 |
Q |
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| T |
865717 |
aacacatttcataatgcatcactttttcatcatgtaggggatgattgtgtgtctatacaaactggttgttctaacatatt |
865796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 27296331 - 27296288
Alignment:
| Q |
184 |
tcatcacctggtgatagtcctaacacagatggaattcacctaca |
227 |
Q |
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| T |
27296331 |
tcatctcctggtgatagtcctaacactgatggaattcacttaca |
27296288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 14737731 - 14737791
Alignment:
| Q |
183 |
ttcatcacctggtgatagtcctaacacagatggaattcacctacaaaattctcaagatgtg |
243 |
Q |
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| T |
14737731 |
ttcatctcctggtgatagccctaataccgatggaattcaccttcagaattccaaagatgtg |
14737791 |
T |
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