View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_15 (Length: 359)
Name: NF2621_low_15
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 3208367 - 3208025
Alignment:
| Q |
1 |
gatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208367 |
gatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatac |
3208268 |
T |
|
| Q |
101 |
ttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaacatccaagatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208267 |
ttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaacatccaagatta |
3208168 |
T |
|
| Q |
201 |
tataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattttcatcaagaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208167 |
tataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattttcatcaagaggt |
3208068 |
T |
|
| Q |
301 |
ccaagcaaagcaagccctggaattctgaaaccagacatacttg |
343 |
Q |
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| T |
3208067 |
ccaagcaaagcaagccctggaattctgaaaccagacatacttg |
3208025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3202393 - 3202055
Alignment:
| Q |
1 |
gatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgctatgatac |
100 |
Q |
| |
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|||||||||||||| |||| ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3202393 |
gatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagccaaaggtcaagcagttaaagatgctggtggtgctgctatgatac |
3202294 |
T |
|
| Q |
101 |
ttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaacatccaagatta |
200 |
Q |
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||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
3202293 |
ttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttatccatcaaagatta |
3202194 |
T |
|
| Q |
201 |
tataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattttcatcaagaggt |
300 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
3202193 |
tataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattggaaatccactttcccctcaagttgcttcattttcatcaagaggt |
3202094 |
T |
|
| Q |
301 |
ccaagcaaagcaagccctggaattctgaaaccagacata |
339 |
Q |
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| T |
3202093 |
ccaagcaaaacaagccctggaattctgaaaccagacata |
3202055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 150 - 339
Target Start/End: Complemental strand, 3216154 - 3215965
Alignment:
| Q |
150 |
tctacctgctgtgcatgtaagttactctgctggtttaaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaact |
249 |
Q |
| |
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||||||||||| | |||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
3216154 |
tctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaact |
3216055 |
T |
|
| Q |
250 |
gtcattggaaatcccaatgcccctcaagttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacata |
339 |
Q |
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|| |||||||||||||||||||||||||| |||| |||||||||||||| |||| | ||| |||||| ||||||||||||||||||||| |
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| T |
3216054 |
gttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacata |
3215965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 3220947 - 3220886
Alignment:
| Q |
277 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
338 |
Q |
| |
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|||| ||||||||| |||||||| |||||| ||| ||| ||||||||||| ||||||||||| |
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| T |
3220947 |
gttgtttcattttcttcaagaggaccaagccaagaaagtcctggaattcttaaaccagacat |
3220886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 3178861 - 3178922
Alignment:
| Q |
277 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
338 |
Q |
| |
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|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
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| T |
3178861 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3178922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 3231180 - 3231119
Alignment:
| Q |
277 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
338 |
Q |
| |
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|||| ||||||||| |||||||| |||||| ||| ||| || |||||||| ||||||||||| |
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| T |
3231180 |
gttgtttcattttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacat |
3231119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 3239979 - 3239918
Alignment:
| Q |
277 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
338 |
Q |
| |
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|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
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| T |
3239979 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3239918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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