View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_16 (Length: 352)
Name: NF2621_low_16
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 124 - 352
Target Start/End: Original strand, 149432 - 149658
Alignment:
| Q |
124 |
ctatttgaggtgctggattggagtgagtatgtgtttattaaatattaaccttaaaaatttgcaaaataaatgacgtgtaacatataaggcctacttaagc |
223 |
Q |
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| T |
149432 |
ctatttgaggtgctggattggagtgagtatgtgtttattaagtattaaccttaaaaatttgaaaaataaatgacgtgtaacatataaggcctacttaagc |
149531 |
T |
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| Q |
224 |
atttaaaacagatggctctattatggatacttagtttgttaatttctcataaactctatatatagaatttctcatgaatccatttaccatcttttatcaa |
323 |
Q |
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| T |
149532 |
aattaaaacagatggctctattatggatacttagtttgttaatttctcagaaactctatatatagaatt--tcatgaatccatttaccatcttttatcaa |
149629 |
T |
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| Q |
324 |
atcatctgatatgaattataaggaatttt |
352 |
Q |
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| T |
149630 |
atcatctgatatgaattataaggaatttt |
149658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 27869777 - 27869821
Alignment:
| Q |
158 |
ttattaaatattaaccttaaaaatttgcaaaataaatgacgtgta |
202 |
Q |
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| T |
27869777 |
ttattaaatattaacattaaaaatttataaaataaatgacatgta |
27869821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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