View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_2 (Length: 533)
Name: NF2621_low_2
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 4079006 - 4079338
Alignment:
| Q |
1 |
ttgtgtcgtctataaaaacttttaacaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtataatgtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4079006 |
ttgtgtcgtctataaaaacttttaacaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtataatgtaaa |
4079105 |
T |
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| Q |
101 |
tttgatattttcaaacttggtggtgttgtattcatattttttaaactgatggtgttttggtctggaagaaagtaattttggtatgttttgtgttgctttt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4079106 |
tttgatattttcaaacttggcggtgttgtattcatattttttaaactgatggtgttttggtctggaagaaagtaattttggtatgttttgtgttgctttt |
4079205 |
T |
|
| Q |
201 |
gtatctgctgctatagagttataaattgatggtttgtcggttttgtgtcttggtgttttgttaatgtctattatgttattttcccattgagtcctgctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4079206 |
gtatctgctgctatagagttataaattgatggtttgtcggttttgtgtcttggtgttttgttaatgtctattatgttattttcccattgagtcctgctgt |
4079305 |
T |
|
| Q |
301 |
tttttcagtatatggctgttaaggtttgtcttt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4079306 |
tttttcagtatatggctgttaaggtttgtcttt |
4079338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 16350928 - 16350596
Alignment:
| Q |
1 |
ttgtgtcgtctataaaaacttttaacaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtataatgtaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16350928 |
ttgtgtcgtctataaaaacttttatcaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtataatgtaaa |
16350829 |
T |
|
| Q |
101 |
tttgatattttcaaacttggtggtgttgtattcatattttttaaactgatggtgttttggtctggaagaaagtaattttggtatgttttgtgttgctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16350828 |
tttgatattttcaaacttggtggtgttgtattcatattttttaaactgatggtggtttggtctggaagaaagtaattttggtatgttttgtgttgctttt |
16350729 |
T |
|
| Q |
201 |
gtatctgctgctatagagttataaattgatggtttgtcggttttgtgtcttggtgttttgttaatgtctattatgttattttcccattgagtcctgctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16350728 |
gtatctgctgctatagagttataaattgatggtttgtcggttttgtgtcttggtgttttgttaatgtctattatgttattttcccattgagtcctgctgt |
16350629 |
T |
|
| Q |
301 |
tttttcagtatatggctgttaaggtttgtcttt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16350628 |
tttttcagtatatggctgttaaggtttgtcttt |
16350596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16351023 - 16350931
Alignment:
| Q |
1 |
ttgtgtcgtctataaaaacttttaacaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtata |
93 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16351023 |
ttgtgtcgtctataaaaacttttatcaaggtttgctctaactttggataaaatagtagagtttgagttagaagctaacatattgtgtagtata |
16350931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 11526414 - 11526559
Alignment:
| Q |
82 |
ttgtgtagtataatgtaaatttgatattttcaaacttggtggtgttgtattcatattttttaaactgatggtgttttggtctggaagaaagtaattttgg |
181 |
Q |
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||||||| || |||||||| |||||||||||||| |||||||||||||||| | | |||| |||||| | ||||| ||||| | || ||||| |||||| |
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| T |
11526414 |
ttgtgtattagaatgtaaaattgatattttcaaagttggtggtgttgtattaaaaattttcaaactgttagtgttctggtcatgtaggaagtatttttgg |
11526513 |
T |
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| Q |
182 |
tatgttttgtgttgcttttgtatctgctgctatagagttataaatt |
227 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11526514 |
tatgctttgtgttgcttttgtatctgctgctagagagttataaatt |
11526559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 25613648 - 25613701
Alignment:
| Q |
391 |
ctgactcaaggcataaaattattgtgttacaaagatcatttcagtttgcttttc |
444 |
Q |
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|||||||||||| ||||||||||||||||| ||| || |||||||||||||||| |
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| T |
25613648 |
ctgactcaaggcttaaaattattgtgttaccaagttcgtttcagtttgcttttc |
25613701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 25613612 - 25613645
Alignment:
| Q |
329 |
tctttctaatattgtaaatgtattgttgggttgt |
362 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25613612 |
tctttctaatattgtaaatgtattgttgggttgt |
25613645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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