View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_21 (Length: 301)
Name: NF2621_low_21
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29258518 - 29258796
Alignment:
| Q |
1 |
attagataacaaaaatatcagcaataataaggtcatttcacatcaaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaa-atcaag |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29258518 |
attagataacaaaaatatcagcaataataaggccatttcacatgaaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaaaatcaag |
29258617 |
T |
|
| Q |
100 |
agtataatgttttctgattttgcagggaataagaagatcctaactttctccatcattggaataatcaccctattgatcatacatgtaacttaactgcatc |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29258618 |
agtataatgttttctgattttgctgggaataagaagatcctaactttctccatcattggaatagtcaccctattgatcatacatgtaacttaactgcatc |
29258717 |
T |
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| Q |
200 |
tgtatttggagatgcttttcaaaaacaattttttgtacaataatccaaacttctgccgaacagttaagaaataacagcc |
278 |
Q |
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| T |
29258718 |
tgtatttggagatgcttttgaaaaacaattttttgtccaataatccaaacttctgctgaacagttaagaaataacagcc |
29258796 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 2376544 - 2376609
Alignment:
| Q |
185 |
taacttaactgcatctgtatttggagatgcttttcaaaaacaattttttgtacaataatccaaactt |
251 |
Q |
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|||||||||||| |||| |||||||||||||| ||||| | || |||||| ||||||||||||||| |
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| T |
2376544 |
taacttaactgcttctgcttttggagatgctttacaaaagc-atattttgtccaataatccaaactt |
2376609 |
T |
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