View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_3 (Length: 529)
Name: NF2621_low_3
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 52880634 - 52881155
Alignment:
| Q |
1 |
tcatggacaacctgccctactctaccttgttccatgtacgctaggtaactaattttgcattttagattagatactgtgtgattctcattagttagcttgt |
100 |
Q |
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| T |
52880634 |
tcatggacaacctgccctactctaccttgttccatgtacgctaggtaactaattttgcattttagattagatactgtg--attctcattagttagcttgt |
52880731 |
T |
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| Q |
101 |
ctaatattgaattgctatcaaattaaattgaacaggagtcactgtgatattgggatgcattagaggtgagatgaagtctctttggaattgtaatgcagac |
200 |
Q |
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| T |
52880732 |
ctaatattgaattgctatcaaattaaattgaacaggagtcactgtgatattgggatgcattagaggtgagatgaagtctctttggaattgtaatgcagac |
52880831 |
T |
|
| Q |
201 |
tcaagttcatctagcgagcctacaaaagtttgaatcatcacgttgttcaatgaaactgggaaaatgatcaaagatacatcgatat-aaacttaatgacat |
299 |
Q |
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| T |
52880832 |
tcaagttcatctagcgagcctacaaaagtttgaatcatcacgttgttcaatgaaactgggaaaatgatcaaagatacatcgatataaaacttaatgacat |
52880931 |
T |
|
| Q |
300 |
gtgaattattcaatgggtatgggaaaattaccaggtgtacaggttactccattcttgggctttcatgaatatctcttgtaat---taataattaatcaat |
396 |
Q |
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| T |
52880932 |
gtgaattattcaatgggtatgggaaaattaccaggtgtacaggttactccattcttgggctttcatgaatatctcttgtaattaataataattaatcaat |
52881031 |
T |
|
| Q |
397 |
gaaaattaactttctttctttgtctcttcgtactctcatttcagataaatgcttcgtaatttttgcgagaaagaaggaaaataaaatgtttttaagttta |
496 |
Q |
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| T |
52881032 |
gaaaattaactttctttctttgtctcttcgtactctcatttcagataaatgcttcgtaatttttgcgagaaagaaggaaaataaaatgtttttaagttta |
52881131 |
T |
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| Q |
497 |
ccattgtttctctcggagtattat |
520 |
Q |
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| T |
52881132 |
ccattgtttctctcggagtattat |
52881155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 251568 - 251523
Alignment:
| Q |
3 |
atggacaacctgccctactctaccttgttccatgtacgctaggtaa |
48 |
Q |
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| T |
251568 |
atggacaacctgcactcctctaccttgttccatgtacactaggtaa |
251523 |
T |
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