View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2621_low_30 (Length: 244)

Name: NF2621_low_30
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2621_low_30
NF2621_low_30
[»] chr1 (3 HSPs)
chr1 (16-244)||(14889203-14889429)
chr1 (154-244)||(14883688-14883778)
chr1 (26-121)||(14883588-14883685)
[»] chr7 (9 HSPs)
chr7 (38-209)||(27243685-27243861)
chr7 (25-121)||(27249715-27249811)
chr7 (137-244)||(27249587-27249692)
chr7 (33-99)||(27323492-27323564)
chr7 (137-244)||(27282221-27282327)
chr7 (137-240)||(27272155-27272256)
chr7 (25-59)||(27314231-27314265)
chr7 (66-98)||(27236731-27236763)
chr7 (26-66)||(27302232-27302272)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 14889203 - 14889429
Alignment:
Q  16 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889203 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 14889302  T
Q  116 ttaagcatcnnnnnnnnnnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttattcattaaccttc 215  Q
    |||||||||           |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  14889303 ttaagcatc--tttttttttataagagtaaagtcatcctctttattctgtcgatattggttattaccgaaaaccaattattactttattcattaagcttc 14889400  T
Q  216 aaccctgcaagctgctcagtactagttta 244  Q
    |||||||||||||||||||||||||||||    
T  14889401 aaccctgcaagctgctcagtactagttta 14889429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 14883688 - 14883778
Alignment:
Q  154 tctttattctgtcggtattggttattaccaaaaactaattattactttattcattaaccttcaaccctgcaagctgctcagtactagttta 244  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14883688 tctttattctgtcggtattggttattaccaaaaaccaattattactttattcattaaccttcaaccctgcaagctgctcagtactagttta 14883778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 14883588 - 14883685
Alignment:
Q  26 aatattttgatctgaaacatttcagattttattttaattata--tatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 121  Q
    |||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||   |||||||||||    
T  14883588 aatattttgatctgaaacatttcaaattttatttttattatatatatagtgatccctagtggggattcagttacaacttacaactgaagaaattaagc 14883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 27243861 - 27243685
Alignment:
Q  38 tgaaacatttcagattttatttta-----attatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagcatcnnnnnnnn 132  Q
    |||||||||||||||||||||| |     ||||||||| |||||||||||||||||||||||||||| ||| |||| |||| |||||||               
T  27243861 tgaaacatttcagattttatttaaggaaaattatatattgtgatccctagtggggattcagttacaacttataaccggagagattaagccaaactttgtt 27243762  T
Q  133 nnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttattcatta 209  Q
        |||||||||| || ||| ||||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||    
T  27243761 tttttaagagtaaaatcttcccctttactctgccggtattggttattaccataaaccaattattactttattaatta 27243685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 27249811 - 27249715
Alignment:
Q  25 gaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 121  Q
    |||||||| ||||||||| |||| || ||| | |||||||||| | |||||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  27249811 gaatatttcgatctgaaaaatttaaggtttaaatttaattatacacagtgatccatagtggggattcagttacaacttacaaccgtagaaattaagc 27249715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 27249692 - 27249587
Alignment:
Q  137 taagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttattcattaaccttcaaccctgcaagctgctcagta 236  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| |||| || |||| | ||||||||||| |   |||||| ||||||||||  ||    
T  27249692 taagagtaaagtcatcc-ctttattctgtctgtattggttattaccacaaaccaagtatt-ccttattcattaagcactaacccttcaagctgctcgata 27249595  T
Q  237 ctagttta 244  Q
    ||||||||    
T  27249594 ctagttta 27249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 27323564 - 27323492
Alignment:
Q  33 tgatctgaaacatttcagattttattttaattata-------tatagtgatccctagtggggattcagttacaa 99  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||    
T  27323564 tgatctgaaacatttcagattttattttaattatatgaatagtatagtgatccctagt-gggattcagttacaa 27323492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 27282327 - 27282221
Alignment:
Q  137 taagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttattcattaaccttcaaccctgcaagctgctcagta 236  Q
    |||||||||  |||||  |||||||||||| ||||||||||||| || |||| || |||||| ||||| | ||| |  ||||||| ||||||||||| ||    
T  27282327 taagagtaacatcatctcctttattctgtctgtattggttattagcacaaaccaagtattac-ttattgaataagcaccaacccttcaagctgctcaata 27282229  T
Q  237 ctagttta 244  Q
    ||||||||    
T  27282228 ctagttta 27282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 27272256 - 27272155
Alignment:
Q  137 taagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttattcattaaccttcaaccctgcaagctgctcagta 236  Q
    |||||||||  |||||  ||||||||||||  |||||||| |||||| |||| || |||||||| ||||||||| |  ||||||| ||||||||||| ||    
T  27272256 taagagtaacttcatctcctttattctgtctatattggtt-ttaccacaaaccaagtattactt-attcattaagcaccaacccttcaagctgctcaata 27272159  T
Q  237 ctag 240  Q
    ||||    
T  27272158 ctag 27272155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 27314265 - 27314231
Alignment:
Q  25 gaatattttgatctgaaacatttcagattttattt 59  Q
    ||||||||||| |||||||||||||||||||||||    
T  27314265 gaatattttgacctgaaacatttcagattttattt 27314231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 27236763 - 27236731
Alignment:
Q  66 tatatagtgatccctagtggggattcagttaca 98  Q
    |||||||||||||||||||||||| ||||||||    
T  27236763 tatatagtgatccctagtggggatccagttaca 27236731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 27302272 - 27302232
Alignment:
Q  26 aatattttgatctgaaacatttcagattttattttaattat 66  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  27302272 aatattttgaaatgaaatatttcagattttattttaattat 27302232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University