View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_31 (Length: 239)
Name: NF2621_low_31
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_31 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 44122281 - 44122505
Alignment:
| Q |
17 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
116 |
Q |
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| T |
44122281 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
44122380 |
T |
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| Q |
117 |
gaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaacaagacgaac--taataattcgaatattcatcatgcatgggacctccc |
214 |
Q |
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| T |
44122381 |
gaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaacaagacgaactataataattcgaatattcatcatgcatgggacctccc |
44122480 |
T |
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| Q |
215 |
tccccatctcattaaataaacaata |
239 |
Q |
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| T |
44122481 |
tccccatctcattaaataaacaata |
44122505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 44143098 - 44143230
Alignment:
| Q |
74 |
tagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaacaaga |
173 |
Q |
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|||||| |||||| ||||||||| ||||| ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| | |
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| T |
44143098 |
tagcaagttttccggctaactcaggtccatattaataatgtta-aaaataaacaaacactattctatgggtgttgtagcaatggcgactgctaaacaaaa |
44143196 |
T |
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| Q |
174 |
cgaactaataattcgaatattcatcatgcatggg |
207 |
Q |
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| T |
44143197 |
ggaactaatcattcgaatatctatcatccatggg |
44143230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 50032048 - 50032240
Alignment:
| Q |
17 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50032048 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
50032147 |
T |
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| Q |
117 |
gaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaacaagacgaactaataattcgaatattcatcatgcatgggac |
209 |
Q |
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| T |
50032148 |
gaaaataaacaaactttattttatgagtgttgtagcaatggcaactgtaaaacaagacgaactaataattcgaatattcatcatgcatgggac |
50032240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 50024930 - 50025049
Alignment:
| Q |
17 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50024930 |
agtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgtta |
50025029 |
T |
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| Q |
117 |
gaaaataaacaaactttatt |
136 |
Q |
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|||||||||||||||||||| |
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| T |
50025030 |
gaaaataaacaaactttatt |
50025049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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