View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_5 (Length: 499)
Name: NF2621_low_5
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 14127559 - 14128012
Alignment:
| Q |
17 |
agaatttacatctaaaaataaaatctcaaataatttacatctgaaatgaaacattgtaggtttgaattcgcactctaatatattaaatatctcttcaatt |
116 |
Q |
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| T |
14127559 |
agaatttacatctaaaaataaaatattaaatagtttacatctaaaatgagacattgtaggtttgaatctgcactctaatatattaaatatcttttcaatt |
14127658 |
T |
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| Q |
117 |
tctttcaatcttagttgtatttatgatacaaaagagataaagaatttaccatgaaataaaagtatagaggagagttaaaggtgaaaattaggaaacatga |
216 |
Q |
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| T |
14127659 |
tctttcaatcttagttgtatttatgatac-----------------taccatgaaataaaagtatagaggagagttaaaggtgaaaattaggaaacatga |
14127741 |
T |
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| Q |
217 |
aaagaataataggnnnnnnnnttagagaatctattctctaaaattacattaccctaagatattttgatttaaaatgtcaaaataacttaaggttgtaact |
316 |
Q |
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| T |
14127742 |
aaagaataataagaaaaataattagagaatctattctctaaaattacattaccctaagatattttgatttaaaaagtcaaaatcacttaaggttataact |
14127841 |
T |
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| Q |
317 |
atttgactgaatggacataacttaggtgtgtttgatctttgtatgtttctttcataccattaatgtcatctatcctacctatttaagctactattattat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14127842 |
atttgactgaatggacataacttaggtgtgtttgatctttgtatgtttctttcataccattaatgtcatctatcctacctatttaagctactattattat |
14127941 |
T |
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| Q |
417 |
ttttgctcctacaactacaaagcctcttccttacctttcctttcctcttgcaaattacacaccttcatctc |
487 |
Q |
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| T |
14127942 |
ttttgctcctacaactacaaagcctcttccttacctttcctttcctcttgcaaattatacaccttcttctc |
14128012 |
T |
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