View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_7 (Length: 452)
Name: NF2621_low_7
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 19612625 - 19613047
Alignment:
| Q |
17 |
ataaacattttctttgtgataatcctgataattgcctcgcaacatgccacgttctgctctttagaattggagaatgctttgataatttttgttgctgttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19612625 |
ataaacattttctttgtgataatcctgataattgcctcgcaacatgccacgttctgctctttagaattggagaatgctttgataatttgtgttgctgttt |
19612724 |
T |
|
| Q |
117 |
tttacatatattttactaaagttctatttttgcaaaagaggctgcaacaaagacctacaaccaaagaaaacggaacatacagaaaggaggggactaagcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
19612725 |
tttacatatattttactaaagttctatttttgcaaaagaggctgcaacaaagacctacaaccaaagaaaaaggaacatacacaaaggaggggactaagcc |
19612824 |
T |
|
| Q |
217 |
aagaccctcaaaaagtgacaaacctaaagcttgtcattccaagcttgttttgaacnnnnnnnnctagaaatgaaggatggaactgattcccaagtaaaca |
316 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
19612825 |
aagaccctcaaaaagcgacaaatctaaagcttgtcattccaagcttgttttgaacaaaaaaatctagaaaggaaggatggaactgattcccaagtaaaca |
19612924 |
T |
|
| Q |
317 |
atccttacaaggttaagccaaagtttgcaagggaatcaacacattggtttccttttctaaagatgtgagaaaccataaaattcatgccaatcaaaagcct |
416 |
Q |
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|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19612925 |
atccttgcaaggttaagccaaagtttccaagagaatcaacacattggtttccttttctaaagatatgagaaaccataaaattcatgccaatcaaaagcct |
19613024 |
T |
|
| Q |
417 |
cttacaattaaaccatttggttc |
439 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
19613025 |
cttacaattaaaccatttggttc |
19613047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 12488500 - 12488377
Alignment:
| Q |
280 |
ctagaaatgaaggatggaactgattcccaagtaaacaatccttacaaggttaagccaaagtttgcaagggaatcaacacattggtttccttttctaaaga |
379 |
Q |
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|||||||||||||||||| | |||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || ||||||| |||||| | |
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| T |
12488500 |
ctagaaatgaaggatggagcagattcccaagaaaacaatccttgaattgttaagccaaagtttgcaagggaatcaacacactgatttccttctctaaaaa |
12488401 |
T |
|
| Q |
380 |
tgtgagaaaccataaaattcatgc |
403 |
Q |
| |
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| ||||| || | ||||||||||| |
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| T |
12488400 |
tatgagatacaacaaaattcatgc |
12488377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 19609977 - 19610086
Alignment:
| Q |
28 |
ctttgtgataatcctgataattgcctcgcaacatgccacgttctgctctttagaattggagaatgctttgataatttttgttgctgttttttacatatat |
127 |
Q |
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||||||||||| ||| ||||||| ||||||||||||| |||||||| ||||||| |||||||| || || || ||||||||||| ||||| |||| |
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| T |
19609977 |
ctttgtgataaccctagtaattgcttcgcaacatgccatgttctgctatttagaaaaggagaatgtgttaatcatatttgttgctgtcttttatatatgg |
19610076 |
T |
|
| Q |
128 |
tttactaaag |
137 |
Q |
| |
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|||||||||| |
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| T |
19610077 |
tttactaaag |
19610086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 431
Target Start/End: Original strand, 51657796 - 51657888
Alignment:
| Q |
339 |
gtttgcaagggaatcaacacattggtttccttttctaaagatgtgagaaaccataaaattcatgccaatcaaaagcctcttacaattaaacca |
431 |
Q |
| |
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|||||||||||||||| |||||||||| |||| ||| | || ||||||| || |||||||||| | ||||||| |||||||||| ||||| |
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| T |
51657796 |
gtttgcaagggaatcagcacattggttcccttccctataaatatgagaaatcacaaaattcatgtcctgcaaaagcttcttacaattgaacca |
51657888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 414
Target Start/End: Complemental strand, 21851713 - 21851579
Alignment:
| Q |
280 |
ctagaaatgaaggatggaactgattcccaagtaaacaatccttacaaggttaagccaaagtttgcaagggaatcaacacattggtttccttttctaaaga |
379 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||| | || | ||||||||||||||| ||||| ||||||||||||||| |||||| | |
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|
| T |
21851713 |
ctagaaatgaaggatggagcagattcccaagaaaacaatccttgaattgtcaggccaaagtttgcaagagaatctgcacattggtttccttctctaaata |
21851614 |
T |
|
| Q |
380 |
tgtgagaaaccataaaattcatgccaatcaaaagc |
414 |
Q |
| |
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||||||| | | ||||||||||||| | |||||| |
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| T |
21851613 |
tgtgagatattacaaaattcatgccatttaaaagc |
21851579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 230872 - 230749
Alignment:
| Q |
280 |
ctagaaatgaaggatggaactgattcccaagtaaacaatccttacaaggttaagccaaagtttgcaagggaatcaacacattggtttccttttctaaaga |
379 |
Q |
| |
|
|||||||||||||||| | | |||||||||| ||||||| ||| | ||||||||||||||||||||||||||| |||| || ||||||| |||||| | |
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| T |
230872 |
ctagaaatgaaggatgaagcagattcccaagaaaacaattcttgaattgttaagccaaagtttgcaagggaatcagcacactgatttccttctctaaaaa |
230773 |
T |
|
| Q |
380 |
tgtgagaaaccataaaattcatgc |
403 |
Q |
| |
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| ||||| | | ||||||||||| |
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| T |
230772 |
tatgagatataacaaaattcatgc |
230749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 14139428 - 14139485
Alignment:
| Q |
205 |
ggggactaagccaagaccctcaaaaagtgacaaacctaaagcttgtcattccaagctt |
262 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
14139428 |
ggggactaagccaaaaccctcaaaaaaatacaaacctaaagcttggcataccaagctt |
14139485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 27051835 - 27051767
Alignment:
| Q |
334 |
ccaaagtttgcaagggaatcaacacattggtttccttttctaaagatgtgagaaaccataaaattcatg |
402 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||| |||||| ||||||| ||| ||| ||| |||| |
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| T |
27051835 |
ccaaagtttgcaagggaatcaacaacttggttcccttctctaaatatgtgagtaactatacaatacatg |
27051767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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