View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2621_low_9 (Length: 422)
Name: NF2621_low_9
Description: NF2621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2621_low_9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 7901671 - 7901268
Alignment:
| Q |
17 |
tattttctagtgttaaaaactccacctatatgtatttaattgattcgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggtaacg |
116 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901671 |
tattttctagtgttaaaaacttcacctat--gtatttaattgatttgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggtaacg |
7901574 |
T |
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| Q |
117 |
ttgacaaacacttgatctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901573 |
ttgacaaacacttgatctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacat |
7901474 |
T |
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| Q |
217 |
tcttcacttgaatctgtagaaagaacgaaatgctattaagggaaccatgcattgctagctatagtggttaaggtatgaatatgatcgaaatataataact |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7901473 |
tcttcacttgaatctgtagaaagaacgaaatgctattaagggaaccatgcattgctagctatagtagttaaggtatgaatatgatcaaaatataataact |
7901374 |
T |
|
| Q |
317 |
cacatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901373 |
cacatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaag |
7901274 |
T |
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| Q |
417 |
cttgcc |
422 |
Q |
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|||||| |
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| T |
7901273 |
cttgcc |
7901268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 7891123 - 7891022
Alignment:
| Q |
131 |
atctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatc |
230 |
Q |
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||||||||| ||||||| || |||||||||||| ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||| ||||||| |
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| T |
7891123 |
atctccttctgtagcataaattgttggccctggatacctcccatttactgttacaattggttttgcatggcatagcctactcacattcttcatttgaatc |
7891024 |
T |
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| Q |
231 |
tg |
232 |
Q |
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|| |
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| T |
7891023 |
tg |
7891022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 93 - 422
Target Start/End: Complemental strand, 31213637 - 31213303
Alignment:
| Q |
93 |
ttgtattgtgcatggttggtaacgttgacaaacacttgatctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggtt |
192 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31213637 |
ttgtattgtgcatggttggtaacgttgacaagcacttgatctccctccctggcattgatagttggccctggaaacctcccatttaccgttacaatgggtt |
31213538 |
T |
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| Q |
193 |
ttgcatggcacagtctactcacattcttcacttgaatctgtagaaagaac-gaaatgctattaagggaaccatgcattgctagctatagt-ggttaaggt |
290 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
31213537 |
ttgcatggcacaatctactcacattcttatcttgaatctgtagaaagaacaaaaatgctattaagggaaccttgcattgctagctatagtcagttaaggc |
31213438 |
T |
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| Q |
291 |
a---tgaatatgatcgaaatataataactcacatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaa |
387 |
Q |
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| ||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
31213437 |
atgctgaatattatcaaaatattataactcacatcaaactggtatttccttatggcagcttcagatgaagagaataaaccaacaaagagaaataacagaa |
31213338 |
T |
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| Q |
388 |
agtttaatacagacatgaaacttcccaagcttgcc |
422 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
31213337 |
agtttaatacagacgtgaaacttcccaagcttgcc |
31213303 |
T |
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Back To:
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