View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_high_10 (Length: 618)

Name: NF2622_high_10
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_high_10
NF2622_high_10
[»] chr8 (2 HSPs)
chr8 (18-600)||(38731189-38731776)
chr8 (541-590)||(35287742-35287791)
[»] scaffold0172 (1 HSPs)
scaffold0172 (538-590)||(15778-15830)
[»] chr2 (3 HSPs)
chr2 (367-421)||(14695213-14695267)
chr2 (539-594)||(13803519-13803574)
chr2 (538-590)||(19016054-19016106)
[»] chr3 (2 HSPs)
chr3 (505-544)||(24405020-24405059)
chr3 (335-403)||(51537804-51537872)
[»] chr7 (2 HSPs)
chr7 (443-544)||(10623269-10623370)
chr7 (538-590)||(18363719-18363771)
[»] scaffold0063 (1 HSPs)
scaffold0063 (538-594)||(35386-35442)
[»] chr4 (1 HSPs)
chr4 (369-409)||(18403002-18403042)


Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Original strand, 38731189 - 38731776
Alignment:
Q  18 caatcaacacatgctaatttgagaaatgtatgggataaaagttgagacacatgattcaccgttgtattgtagattatacatac-----------actcga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||           ||||||    
T  38731189 caatcaacacatgctaatttgagaaatgtatgggataaaagttgagacacaagattcaccgttgaattgtagattatacatactcaaaagatacactcga 38731288  T
Q  107 ttagaaaacatatataaattgatattatacacctccatgcgtatataatgcttaatttattgtgtatacacaataagt-----------aagagttacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           |||||||||||    
T  38731289 ttagaaaacatatataaattgatattatacacctccatgcgtatataatgcttaatttattgtgtatacgcaataagtgttgagaaatgaagagttacaa 38731388  T
Q  196 atttaaatccgacctcaatgtatcaaatgtttttgcaatattttaccatataaactatgtttttgaaacactataatatatagtattgtttcaataaaga 295  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38731389 atttaaatccgaactcaatgtatcaaatgtttttgtaatattttaccatataaactatgtttttgaaacactataatatatagtattgtttcaataaaaa 38731488  T
Q  296 attataaattttagttgtcttgtgtgatattccacaaaatttgtgtttgttttatgggtttccgacgacggtattgttgttcgatatgagattaagtgat 395  Q
    |||||||||||||||| |||||||||||||||||||||                 |||| ||||||||||||||||||||||||||||||||||||||||    
T  38731489 attataaattttagttctcttgtgtgatattccacaaa-----------------gggtgtccgacgacggtattgttgttcgatatgagattaagtgat 38731571  T
Q  396 ttagacttgtactcgttttgtagtggctcgatatgagattaaacgatttagacttgtacttattttgtagtagttgcatgcttgtgactcaaaaatttga 495  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38731572 ttagatttgtactcgttttgtagtggctcgatatgagattaaacgatttagacttgtactcattttgtagtagttgcatgcttgtgactcaaaaatttga 38731671  T
Q  496 aaaggttaggttttgttaacacgaaaaggtttggttattaacgtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatctt 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  38731672 aaaggttaggttttgttaacacgaaaaggtttggttattaacgtattggcttgagatttaggagtatgcttctcctcaaggtatcaagttcgattatctt 38731771  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 35287742 - 35287791
Alignment:
Q  541 ttggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 590  Q
    |||||||||||||| ||||| ||||| |||||||||||||| ||| ||||    
T  35287742 ttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgatt 35287791  T

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Target: scaffold0172 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 590
Target Start/End: Complemental strand, 15830 - 15778
Alignment:
Q  538 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 590  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||    
T  15830 gtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgatt 15778  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 14695267 - 14695213
Alignment:
Q  367 tattgttgttcgatatgagattaagtgatttagacttgtactcgttttgtagtgg 421  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||| |||||    
T  14695267 tattgttgttcgatacgagatttggtgatttagacttgtactcattttgcagtgg 14695213  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 13803519 - 13803574
Alignment:
Q  539 tattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatct 594  Q
    ||||||||||||| |||||||| ||||| |||||||||| ||| ||| ||||||||    
T  13803519 tattggcttgagacttaggagtgtgctcctcctcaaggtctcaggttcgattatct 13803574  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 590
Target Start/End: Original strand, 19016054 - 19016106
Alignment:
Q  538 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 590  Q
    |||||||||||||| || ||||| ||||| ||||| |||| ||||||||||||    
T  19016054 gtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgatt 19016106  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Original strand, 24405020 - 24405059
Alignment:
Q  505 gttttgttaacacgaaaaggtttggttattaacgtattgg 544  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  24405020 gttttgttaacccgaaagggtttggttattaacgtattgg 24405059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 51537872 - 51537804
Alignment:
Q  335 tttgtgtttgttttatgggtttccgacgacggtattgttgttcgatatgagattaagtgatttagactt 403  Q
    |||||||||||||| |||||||| |||||| ||  |||||||||| |||||||   | |||||||||||    
T  51537872 tttgtgtttgttttgtgggtttcggacgactgttctgttgttcgaaatgagatcgggagatttagactt 51537804  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 544
Target Start/End: Original strand, 10623269 - 10623370
Alignment:
Q  443 ttagacttgtacttattttgtagtagttgcatgcttgtgactcaaaaatttgaaaaggttaggttttgttaacacgaaaaggtttggttattaacgtatt 542  Q
    ||||||||||||| | |||  ||||| ||| || ||||||||||||||   ||||||||  |||| | ||||| ||| | |||||||||| |||||||||    
T  10623269 ttagacttgtactcactttacagtagctgcgtgtttgtgactcaaaaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtatt 10623368  T
Q  543 gg 544  Q
    ||    
T  10623369 gg 10623370  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 590
Target Start/End: Original strand, 18363719 - 18363771
Alignment:
Q  538 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 590  Q
    |||| |||||||||||| ||||| ||||| |||||||||| ||| ||||||||    
T  18363719 gtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgatt 18363771  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 594
Target Start/End: Complemental strand, 35442 - 35386
Alignment:
Q  538 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatct 594  Q
    |||||||||||  || ||||||||||||| |||||||||| | ||||| ||||||||    
T  35442 gtattggcttggaatctaggagtatgctcctcctcaaggtcttaagttcgattatct 35386  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 18403042 - 18403002
Alignment:
Q  369 ttgttgttcgatatgagattaagtgatttagacttgtactc 409  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  18403042 ttgttgttcgatacgagattgggtgatttagacttgtactc 18403002  T

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