View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_103 (Length: 236)
Name: NF2622_high_103
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_103 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 47895775 - 47895917
Alignment:
| Q |
81 |
tcatgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtc |
180 |
Q |
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| T |
47895775 |
tcatgcttgctgatcgagaaagtttggagaattcaaatgttatcatttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtc |
47895874 |
T |
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| Q |
181 |
caagctttacagtttctctaaagaaataaattctgttggtact |
223 |
Q |
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| T |
47895875 |
caagctttacagtttctctaaagaaataaattctgttggtact |
47895917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 31213686 - 31213546
Alignment:
| Q |
83 |
atgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtcca |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31213686 |
atgcttgctgatcgagaaagtttggagaattcaaatgttatcgtttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtcca |
31213587 |
T |
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| Q |
183 |
agctttacagtttctctaaagaaataaattctgttggtact |
223 |
Q |
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| T |
31213586 |
agctttacagtttatctaaagaaacaaattctgttggtact |
31213546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 31219441 - 31219301
Alignment:
| Q |
83 |
atgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtcca |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31219441 |
atgcttgctgatcgagaaagtttggagaattcaaatgttatcgtttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtcca |
31219342 |
T |
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| Q |
183 |
agctttacagtttctctaaagaaataaattctgttggtact |
223 |
Q |
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||||||||||||| |||||||||| |||||||||||||||| |
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| T |
31219341 |
agctttacagtttatctaaagaaacaaattctgttggtact |
31219301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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