View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_112 (Length: 230)
Name: NF2622_high_112
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_112 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 25619478 - 25619672
Alignment:
| Q |
17 |
cataggttaattgggatggacatgaaaacttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatttccaacgcacctgaaatgtatctacc |
116 |
Q |
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| T |
25619478 |
cataggttaattgggatggacacgaaaacttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatttccaaagcacctgaaatgtatctacc |
25619577 |
T |
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| Q |
117 |
atttccaacaaaaaggcctagacttgctgagggtaacaatttcttggaggacaattcattggaaaggttaactaccgtgtcaaaagagctaaaca |
211 |
Q |
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| T |
25619578 |
atttccaacaaaaaggcctagacttgctgagggtaacaatttcttggaggacaattcagtggaaaggttaactaccgtgtcaaaagagctaaaca |
25619672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 25617510 - 25617558
Alignment:
| Q |
45 |
cttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatttcc |
93 |
Q |
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| T |
25617510 |
cttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatttcc |
25617558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 25442704 - 25442578
Alignment:
| Q |
17 |
cataggttaattgggatggacatgaaaacttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatttccaacgcacctgaaatgtatctacc |
116 |
Q |
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|||||||||| ||||||| || ||||| ||||| |||||||||| |||||||||||||| ||| ||||||||||| || |||||| | || ||||||| |
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| T |
25442704 |
cataggttaactgggatgaacttgaaattttgcaaaatcaaaaccgcgtcaatccttggcaagttgaacttatttcccacacacctgcagtgcatctacc |
25442605 |
T |
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| Q |
117 |
atttc---caacaaaaaggcctagact |
140 |
Q |
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| T |
25442604 |
attcctctcaacaaaaaagcctagact |
25442578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 26096668 - 26096596
Alignment:
| Q |
18 |
ataggttaattgggatggacatgaaaacttgcagaatcaaaaccatgtcaatccttggcaggttcaacttatt |
90 |
Q |
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||||||||| ||||||| || ||||| | |||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
26096668 |
ataggttaagtgggatgaacctgaaatttcgcagaatccaaaccgtgtcaatccttggcaggttgaacttatt |
26096596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 25727046 - 25726982
Alignment:
| Q |
17 |
cataggttaattgggatggacatgaaaacttgcagaatcaaaaccatgtcaatccttggcaggtt |
81 |
Q |
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||||||||||||||||||||| ||| | | |||||||| ||||| |||||||||||||||||| |
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| T |
25727046 |
cataggttaattgggatggacttgatatcccgcagaatccaaacctagtcaatccttggcaggtt |
25726982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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