View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_121 (Length: 203)
Name: NF2622_high_121
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_121 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 44613359 - 44613189
Alignment:
| Q |
17 |
tcaccttattgataacagacacaagaacagtgctaagaaaatatcccatagccaatgaagcccatgaaagtgatgtagctaaagacctcatactccaagg |
116 |
Q |
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| T |
44613359 |
tcaccttattgataacagacacaagaacagtgctaagaaaatatcccatagccaatgaagcccatgaaagtgatgtagctaaagacctcatactccaagg |
44613260 |
T |
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| Q |
117 |
tgcctcagtgaagaaaaactccatcataccagccaatgtaaaaagatcagctgaacctaaaaacaagtatt |
187 |
Q |
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| T |
44613259 |
tgcctcagtgaagaaaaactccatcataccagccaatgtaaaaagatcagctgaacctaaaaacaagtatt |
44613189 |
T |
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Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 16830331 - 16830214
Alignment:
| Q |
56 |
aatatcccatagccaatgaagcccatgaaagtgatgtagctaaagacctcatactccaaggtgcctcagtgaagaaaaactccatcataccagccaatgt |
155 |
Q |
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| T |
16830331 |
aatatcccattgccaaagaagcccaagaaagtgatgttgctaatgatctcatacttgaaggtgcttctgagaagaaaaattccagtaatccagccaatgt |
16830232 |
T |
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| Q |
156 |
aaaaagatcagctgaacc |
173 |
Q |
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| T |
16830231 |
gaaaagatcagctgaacc |
16830214 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 25170275 - 25170345
Alignment:
| Q |
115 |
ggtgcctcagtgaagaaaaactccatcataccagccaatgtaaaaagatcagctgaacctaaaaacaagta |
185 |
Q |
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| T |
25170275 |
ggtgcttctgtgaagaaaaattccaacaaaccagccatagtgaaaagatcagctgaaccaagaaacaagta |
25170345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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