View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_high_19 (Length: 489)
Name: NF2622_high_19
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 44554157 - 44554617
Alignment:
| Q |
19 |
aatagatctgtagaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44554157 |
aatagatctgtagaaatgttaggaaaagatggaagagggttggtggaagtagggtttgttgttgatggttggaaaatagttgaaggattggatgggattg |
44554256 |
T |
|
| Q |
119 |
taggattcatattcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44554257 |
taggattcatattcataattggttgggtagttgcaatattgttttgaggcatggaaattgatggaacagttgcatgagggatacttagagtggtgttaac |
44554356 |
T |
|
| Q |
219 |
cacttgtgacattgttgcttctgttattggtagtgaaactgttgcagttgtaacaacttgtgaaggtgttggtgccgaaatttgtggtggttttgatatg |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44554357 |
cacttgtgacattgttgattctgttattggtagtgaaactgttgcagttgtaacaacttgtgacggtgttggtgccgaaatttgtggtggttttgatatg |
44554456 |
T |
|
| Q |
319 |
ttttgaggtgaagggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttgg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44554457 |
ttttgaggtgaagggttggtatgaaaatgatcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttgg |
44554556 |
T |
|
| Q |
419 |
ttctcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44554557 |
ttctcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtg |
44554617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 479
Target Start/End: Complemental strand, 44532836 - 44532706
Alignment:
| Q |
349 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa |
448 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||| || || || |||||||| |||| || ||| ||||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
44532836 |
tcaagtgcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttctttggttcttttgtgatacttgtatacattttcaa |
44532737 |
T |
|
| Q |
449 |
acttctctttgcatttctttgaacttctgtg |
479 |
Q |
| |
|
| ||||| ||||| |||||||| |||||||| |
|
|
| T |
44532736 |
atttctccttgcacttctttgagcttctgtg |
44532706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 349 - 464
Target Start/End: Complemental strand, 12682190 - 12682075
Alignment:
| Q |
349 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaa |
448 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||| |||||||||||||| ||||||| || |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12682190 |
tcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctttggttctcttgtgatatttgtaaacattctcaa |
12682091 |
T |
|
| Q |
449 |
acttctctttgcattt |
464 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
12682090 |
acttttctttgcattt |
12682075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University