View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_20 (Length: 476)
Name: NF2622_high_20
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Complemental strand, 311687 - 311232
Alignment:
| Q |
10 |
gagaagaagaagaaatggcgtcaatggcagcagcagca---acgatgggtttaggtttgggtatggggggtatgactgtaacttcccatttctcaccttc |
106 |
Q |
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| T |
311687 |
gagaacaagaagaaatggcgtcaatggcagcagcagcagcaacgatgggtttaggtttgggtatggggggtatgactgtaacttcccatttctcaccttc |
311588 |
T |
|
| Q |
107 |
gtctcgtcttctctctttccaacctaataatctaatcatccctcatcacaaacgccgaacaacttgttctatttcaatcaaccacaaaaccaccaccctc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
311587 |
atctcgtcttctctctttccaacctaataatctaatcaaccctcaacacaaacgccgaacaacatgttctatttcaatcaaccacaaaaccaacaccctc |
311488 |
T |
|
| Q |
207 |
atcaacaatgaaagcaacaacgttcttctctctggttccactcgaacagttacaaccctattcgccaccgcgcttttatgtgtcaaagcattcgtcaaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
311487 |
atcaacaatgaaagcaacaacgttcttctctctggttccactcgaacagttacaaccctattcgccaccgcgcttttatgtgtcaaagcattcgtcaaca |
311388 |
T |
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| Q |
307 |
ttcttccaccaccagacctatgtgcatcaattgcaacatcatcagcgtcgctttgtttcgctgtcatgaaaaataccaggtcggggacggtgaacacgcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
311387 |
ttcttccaccaccagacctatgtgcatcaattgcaacatcatcagcgtcgctttgtttcgctgtcatgaaaaatactaggtcggggacggtgaacacgcc |
311288 |
T |
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| Q |
407 |
gttgacggttgtagcggcggggttgaagaaatggttggatatttacagtggtgtgt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
311287 |
gttgacggttgtagcggcggggttgaagaaatggttggatatttacagtggtgtgt |
311232 |
T |
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