View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_high_21 (Length: 474)
Name: NF2622_high_21
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 41011231 - 41011688
Alignment:
| Q |
1 |
aatattccattctcaacaccctttcttcttcactcttcttctccatttatggaacaaaacaactccatccctgatttcactgagttagactcattccaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41011231 |
aatattccattctcaacaccctttcttcttcactcttcttctccatttatggaacaaaacaactccatccctgatttcactgagttagactcattccaag |
41011330 |
T |
|
| Q |
101 |
acactctctcccaactgaataactctgagttgagcagtggctatagcagctatggtggatcaccttcaccaagtactccaatcttgatgcaaaggagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41011331 |
acactctctcccaactgaataactctgagttgagcagtggctatagcagctatggtggatcaccttcaccaagtactccaatcttgatgcaaaggagcat |
41011430 |
T |
|
| Q |
201 |
tagcagtcattcccttcagtacaataatgggactcaccattatcccctctctgcnnnnnnngctgacttgctcgactcagacgatgctccggtgaggaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41011431 |
tagcagtcattcccttcagtacaataatgggactcaccattatcccctctctgctttttttgctgacttgctcgactcagacgatgctccggtgaggaaa |
41011530 |
T |
|
| Q |
301 |
gtttgtagtaccggcgatttgcaggtacaccatgctcattgttttaaattccagttgcggtcacattttaataattttagaggtgtgtgcgactacgtta |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41011531 |
gtttgcagtaccggcgatttgcaggtacaccatgttcattgttttaaattccagttgcggtcacattttaataattttagaggtgtgtgcgactacgtta |
41011630 |
T |
|
| Q |
401 |
aacatttaaaccttaattgcagcataaacacaatcgcaaccgcgttttaaaacctatg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41011631 |
aacatttaaaccttaattgcagcataaacacaatcgcaaccgcgttttaaaacctatg |
41011688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University