View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_high_24 (Length: 454)

Name: NF2622_high_24
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_high_24
NF2622_high_24
[»] chr2 (18 HSPs)
chr2 (19-98)||(36180869-36180948)
chr2 (189-279)||(27350053-27350143)
chr2 (229-279)||(43770954-43771004)
chr2 (229-275)||(19424747-19424793)
chr2 (405-454)||(8896274-8896323)
chr2 (229-276)||(18494386-18494433)
chr2 (192-279)||(33660483-33660569)
chr2 (229-271)||(4478407-4478449)
chr2 (229-279)||(33709347-33709397)
chr2 (229-279)||(41463965-41464015)
chr2 (230-279)||(33551101-33551150)
chr2 (186-279)||(4166918-4167010)
chr2 (229-276)||(13711502-13711549)
chr2 (233-279)||(4264192-4264238)
chr2 (408-454)||(16126093-16126139)
chr2 (408-454)||(16333486-16333532)
chr2 (231-279)||(26357617-26357665)
chr2 (229-277)||(31570851-31570899)
[»] chr6 (18 HSPs)
chr6 (229-279)||(8513271-8513321)
chr6 (231-279)||(29182203-29182251)
chr6 (230-277)||(33893100-33893147)
chr6 (229-279)||(4318919-4318969)
chr6 (229-279)||(6088946-6088996)
chr6 (405-452)||(24949538-24949585)
chr6 (229-279)||(3880035-3880085)
chr6 (186-279)||(1945829-1945922)
chr6 (405-454)||(16661618-16661667)
chr6 (414-454)||(10109427-10109467)
chr6 (419-454)||(4890142-4890177)
chr6 (230-277)||(15491654-15491701)
chr6 (229-279)||(7235130-7235180)
chr6 (405-454)||(2667341-2667390)
chr6 (405-454)||(17496334-17496383)
chr6 (188-220)||(11084170-11084202)
chr6 (405-453)||(31708896-31708944)
chr6 (405-453)||(31948658-31948706)
[»] chr5 (29 HSPs)
chr5 (189-276)||(9200232-9200318)
chr5 (190-279)||(7693230-7693318)
chr5 (409-454)||(2799638-2799683)
chr5 (229-277)||(30969413-30969461)
chr5 (411-454)||(2805806-2805849)
chr5 (405-452)||(32110686-32110733)
chr5 (191-279)||(32563150-32563237)
chr5 (229-279)||(15724528-15724578)
chr5 (229-279)||(36866800-36866850)
chr5 (229-274)||(8466783-8466828)
chr5 (230-279)||(28416614-28416663)
chr5 (186-279)||(36860419-36860511)
chr5 (229-279)||(5837593-5837643)
chr5 (233-279)||(25501013-25501059)
chr5 (229-279)||(25668688-25668737)
chr5 (229-279)||(26268112-26268162)
chr5 (229-274)||(8741979-8742024)
chr5 (405-454)||(39925206-39925255)
chr5 (405-453)||(30788208-30788256)
chr5 (229-277)||(40133423-40133471)
chr5 (229-279)||(19119897-19119947)
chr5 (229-275)||(22019670-22019716)
chr5 (231-277)||(35933942-35933988)
chr5 (405-454)||(20040427-20040476)
chr5 (185-218)||(31642592-31642625)
chr5 (405-454)||(33402603-33402652)
chr5 (231-279)||(13956432-13956480)
chr5 (229-261)||(27330344-27330376)
chr5 (409-453)||(34347474-34347518)
[»] chr1 (20 HSPs)
chr1 (229-277)||(7079168-7079216)
chr1 (229-279)||(11742442-11742492)
chr1 (229-279)||(47279223-47279273)
chr1 (411-452)||(38786964-38787005)
chr1 (230-279)||(48620672-48620721)
chr1 (230-272)||(3534967-3535009)
chr1 (405-454)||(31932194-31932243)
chr1 (233-273)||(3309186-3309226)
chr1 (183-279)||(1547276-1547371)
chr1 (405-452)||(12685916-12685963)
chr1 (416-454)||(10648217-10648255)
chr1 (229-279)||(32216089-32216139)
chr1 (412-454)||(49903701-49903743)
chr1 (187-220)||(28012047-28012080)
chr1 (409-454)||(29253486-29253531)
chr1 (405-454)||(41855737-41855786)
chr1 (231-279)||(9903146-9903194)
chr1 (229-273)||(16415679-16415723)
chr1 (405-453)||(28490163-28490211)
chr1 (182-218)||(42721027-42721063)
[»] chr7 (31 HSPs)
chr7 (230-279)||(5657579-5657628)
chr7 (229-279)||(27421477-27421527)
chr7 (409-454)||(18756606-18756651)
chr7 (229-273)||(43686054-43686098)
chr7 (402-454)||(47713444-47713496)
chr7 (232-279)||(8861301-8861348)
chr7 (188-279)||(30055499-30055590)
chr7 (405-452)||(32222553-32222600)
chr7 (409-452)||(40818711-40818754)
chr7 (229-279)||(12165765-12165815)
chr7 (229-279)||(29173553-29173603)
chr7 (233-279)||(34362246-34362292)
chr7 (189-279)||(31579167-31579256)
chr7 (229-277)||(4582932-4582980)
chr7 (231-279)||(22687254-22687302)
chr7 (230-277)||(6546533-6546580)
chr7 (229-276)||(26980336-26980383)
chr7 (229-279)||(12390728-12390778)
chr7 (229-279)||(21991649-21991699)
chr7 (408-454)||(38850708-38850754)
chr7 (405-454)||(9136674-9136723)
chr7 (405-454)||(16807158-16807207)
chr7 (405-454)||(31496657-31496706)
chr7 (405-454)||(36819619-36819668)
chr7 (405-454)||(37101038-37101087)
chr7 (405-454)||(38069054-38069103)
chr7 (230-271)||(44598378-44598419)
chr7 (229-277)||(23111203-23111251)
chr7 (405-453)||(30462234-30462282)
chr7 (229-277)||(48928396-48928444)
chr7 (229-277)||(48928663-48928711)
[»] scaffold0009 (1 HSPs)
scaffold0009 (229-277)||(42386-42434)
[»] chr8 (26 HSPs)
chr8 (231-279)||(36695069-36695117)
chr8 (229-279)||(465879-465929)
chr8 (233-279)||(38644019-38644065)
chr8 (229-277)||(11727061-11727109)
chr8 (229-277)||(13307660-13307708)
chr8 (229-279)||(40862456-40862507)
chr8 (229-279)||(9864185-9864235)
chr8 (229-279)||(27082941-27082991)
chr8 (405-454)||(3466286-3466335)
chr8 (409-454)||(4960158-4960203)
chr8 (405-454)||(8123658-8123707)
chr8 (405-454)||(44887724-44887773)
chr8 (231-279)||(12876148-12876196)
chr8 (418-453)||(66942-66977)
chr8 (229-276)||(24823378-24823425)
chr8 (405-452)||(44717299-44717346)
chr8 (408-454)||(8496895-8496941)
chr8 (233-279)||(16446978-16447024)
chr8 (233-279)||(34952134-34952180)
chr8 (229-279)||(37970622-37970672)
chr8 (405-454)||(20671259-20671308)
chr8 (405-454)||(28583312-28583361)
chr8 (419-452)||(40035304-40035337)
chr8 (419-452)||(44039842-44039875)
chr8 (405-454)||(44947021-44947069)
chr8 (229-277)||(43025739-43025787)
[»] chr4 (26 HSPs)
chr4 (231-279)||(4205156-4205204)
chr4 (232-279)||(34948220-34948267)
chr4 (179-275)||(39397907-39398002)
chr4 (229-279)||(7703555-7703605)
chr4 (233-279)||(37287776-37287822)
chr4 (415-452)||(29821063-29821100)
chr4 (405-454)||(42185277-42185326)
chr4 (231-279)||(17167753-17167801)
chr4 (231-279)||(17173330-17173378)
chr4 (191-279)||(37775670-37775757)
chr4 (229-276)||(54499365-54499412)
chr4 (229-279)||(4598031-4598080)
chr4 (233-279)||(23761114-23761160)
chr4 (188-279)||(30002747-30002837)
chr4 (229-279)||(38011892-38011942)
chr4 (405-454)||(43447168-43447217)
chr4 (405-454)||(48336439-48336488)
chr4 (231-279)||(19089576-19089624)
chr4 (229-273)||(47253787-47253831)
chr4 (408-454)||(1613229-1613275)
chr4 (405-454)||(40411620-40411669)
chr4 (229-278)||(49376005-49376054)
chr4 (231-279)||(50764772-50764818)
chr4 (230-279)||(55241227-55241276)
chr4 (229-261)||(29584339-29584371)
chr4 (231-279)||(32592133-32592181)
[»] chr3 (25 HSPs)
chr3 (405-453)||(18013478-18013526)
chr3 (229-279)||(44891535-44891585)
chr3 (405-452)||(1334304-1334351)
chr3 (229-279)||(34132964-34133014)
chr3 (229-279)||(44186598-44186648)
chr3 (230-275)||(33698218-33698263)
chr3 (231-279)||(4015491-4015539)
chr3 (231-279)||(37157739-37157787)
chr3 (231-279)||(37203098-37203146)
chr3 (183-218)||(39282637-39282672)
chr3 (231-277)||(2613921-2613967)
chr3 (229-279)||(21193635-21193685)
chr3 (229-279)||(29099384-29099434)
chr3 (229-279)||(35844355-35844405)
chr3 (229-263)||(45174532-45174566)
chr3 (229-279)||(47481551-47481601)
chr3 (405-454)||(901095-901144)
chr3 (405-454)||(2643276-2643325)
chr3 (229-270)||(25579768-25579809)
chr3 (405-454)||(29720398-29720447)
chr3 (407-452)||(52094103-52094148)
chr3 (231-279)||(2007964-2008012)
chr3 (231-279)||(11466855-11466903)
chr3 (422-454)||(36594426-36594458)
chr3 (405-453)||(50673680-50673728)
[»] scaffold0204 (1 HSPs)
scaffold0204 (405-454)||(23961-24010)
[»] scaffold0289 (1 HSPs)
scaffold0289 (420-452)||(9153-9185)
[»] scaffold0500 (1 HSPs)
scaffold0500 (405-454)||(687-736)
[»] scaffold0283 (1 HSPs)
scaffold0283 (405-454)||(2999-3047)
[»] scaffold0291 (1 HSPs)
scaffold0291 (231-279)||(7927-7975)
[»] scaffold0002 (1 HSPs)
scaffold0002 (231-279)||(94480-94528)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 36180869 - 36180948
Alignment:
Q  19 attattataataagaatgacagataatagagtataatgcatctttgtaaacttttgagcctcgagatatgccttgacgag 98  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||| |||||||||||||||| ||||||    
T  36180869 attattataataagaaggacagataatagagtataatgtatctttgtaagtttttgtgcctcgagatatgcctagacgag 36180948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 27350143 - 27350053
Alignment:
Q  189 aggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||| ||||||||||||||||||||||        ||||||||||||||||||  ||||||| |||||||| ||||||| ||||||    
T  27350143 aggaaaattttatggtgaagtcattaaaataatattttttggtgaagttaacactatagcatcaaaaatgttgtgagtaacaccacactgt 27350053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 43771004 - 43770954
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  43771004 ggtgaagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 43770954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 19424793 - 19424747
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacacccca 275  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  19424793 ggtgaagttaacactataacatcaaaagtgttgtgagtaacacccca 19424747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 8896274 - 8896323
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  8896274 tccctccattccgcaatagatgacccatttgaaaatgtgcaattttgacc 8896323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 18494433 - 18494386
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||    
T  18494433 ggtgaagttaacactatagcatcaaaagtgttgtgagtaacaccccac 18494386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 33660569 - 33660483
Alignment:
Q  192 aaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||||| |        | | ||||||||||||||| |||||||||||||||| |||||||| |||||    
T  33660569 aaaattctatggtgaagtcattaaaatgacttttctagtt-aagttaacactataacatcaaaagtgttgtgagtaacacccaactgt 33660483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 4478407 - 4478449
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacac 271  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  4478407 ggtgaagttaacactataacatcaaaagtgttgtgagtaacac 4478449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 33709397 - 33709347
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| ||||||||||||| || |||||| |||||||    
T  33709397 ggtgaagttaacactataacatcaaaagtgttgcgagtaacactccactgt 33709347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 41464015 - 41463965
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||| ||||||    
T  41464015 ggtgaagttaatactataaaatcaaaagtgttgtgagtaacacctcactgt 41463965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 33551150 - 33551101
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  33551150 gtgaagttaacactataacatcaaaaatgtagtgagtaacaccccactgt 33551101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 4166918 - 4167010
Alignment:
Q  186 ataaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||||  ||||| |        ||||||||||||| |||| |||||||| | |||||| ||||||||||||||    
T  4166918 ataaggaaaattctatggtgaagtcacgaaaatgacttttct-ggtgaagttaacattatagtatcaaaaatattgtgagtaacaccccactgt 4167010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 13711502 - 13711549
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||||||| ||||  |||||||||||||||| |||||||||||    
T  13711502 ggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccccac 13711549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 4264238 - 4264192
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||||||    
T  4264238 aagttaacactatagcatcaaaagtgttgtgagtaacatcccactgt 4264192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 16126139 - 16126093
Alignment:
Q  408 ctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| ||| |||| |||| ||||||||||||||||||||||||||    
T  16126139 ctccgtcccgcaataaatgacccatttgaaaatgtgcaattttgacc 16126093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 16333486 - 16333532
Alignment:
Q  408 ctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| ||| |||| |||| ||||||||||||||||||||||||||    
T  16333486 ctccgtcccgcaataaatgacccatttgaaaatgtgcaattttgacc 16333532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 26357617 - 26357665
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| ||| |||| ||||| ||||||||    
T  26357617 tgaagttaacactataacatcaaaactgtagtgagtaacatcccactgt 26357665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 31570899 - 31570851
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||| |||||||||||| || ||||||||||| | ||||||||||||    
T  31570899 ggtgaaattaacactataacattaaaagtgttgtaagtaacaccccact 31570851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 8513271 - 8513321
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8513271 ggtgaagttaacactataatatcaaaagtgttgtgagtaacaccccactgt 8513321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 29182203 - 29182251
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  29182203 tgaagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 29182251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 33893147 - 33893100
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  33893147 gtgaagttaacactataacatcaaaagtgttgtgagtaacaccccact 33893100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 4318969 - 4318919
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  4318969 ggtgaagttaacactataacatcaaaagtgttatgagtaacaccccactgt 4318919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 6088946 - 6088996
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  6088946 ggtgaagttaacactatagtatcaaaagtgttgtgagtaacgccccactgt 6088996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 24949538 - 24949585
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  24949538 tccctccgtcccgcaatagatgacccatttgaaaatgtgcaattttga 24949585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 3880085 - 3880035
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||| |||||    
T  3880085 ggtgaagttaacattatagtatcaaaagtgttgtgagtaacaccctactgt 3880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 1945829 - 1945922
Alignment:
Q  186 ataaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| ||||||||||| | ||| |        ||||||||||||||||||| ||||||| |||  ||| ||||||||||||||    
T  1945829 ataaggaaaattctacggtgaagtcataagaatgactttttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgt 1945922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 16661667 - 16661618
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| || ||| ||||||||||||||||||||||||| ||||||||||    
T  16661667 tccctcagtcccgcaatagatgatccatttgaaaatgtgtaattttgacc 16661618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 10109467 - 10109427
Alignment:
Q  414 tccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  10109467 tccgcaatagatgatccatttaaaaatgtgcaattttgacc 10109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Complemental strand, 4890177 - 4890142
Alignment:
Q  419 aatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||||||||| |||||||||||||||||||    
T  4890177 aatagatgatccatttaaaaatgtgcaattttgacc 4890142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 15491654 - 15491701
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||||||    
T  15491654 gtgaagttaacattgtaacatcaaaagtgttgtgagtaacaccccact 15491701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 7235180 - 7235130
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||| |||||||||| ||||||||||| |||| || |||||||||||    
T  7235180 ggtgaagtcaacactataacatcaaaagtgtagtgagtagcaccccactgt 7235130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 2667390 - 2667341
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  2667390 tccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacc 2667341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 17496383 - 17496334
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  17496383 tccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacc 17496334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 11084202 - 11084170
Alignment:
Q  188 aaggaaaattctatggtgaagtcattaaaataa 220  Q
    ||||||||||||||||||||||||| |||||||    
T  11084202 aaggaaaattctatggtgaagtcatgaaaataa 11084170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 31708896 - 31708944
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| | | ||||||||||| |||| ||||||||||||||||||    
T  31708896 tccctccgtcctgcaatagatgatctatttaaaaatgtgcaattttgac 31708944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 31948706 - 31948658
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    |||||||||  || ||||||||||||||||||||||||| |||| ||||    
T  31948706 tccctccgtctcgcaatagatgatccatttgaaaatgtgtaattatgac 31948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 9200232 - 9200318
Alignment:
Q  189 aggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||| ||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  9200232 aggaaaattttatggtgaagtcattaaaataacttttct-ggtgaagttaacactataacatcaaaagtgttgtgagtaacaccccac 9200318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 7693230 - 7693318
Alignment:
Q  190 ggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  7693230 ggaaaattctatggtgaagtcattaaaatgacttttct-ggtgaagttaacactataacatcaaaagtgttgtgagtaacatcccactgt 7693318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 2799638 - 2799683
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  2799638 tccgttccgtaatagatgacccatttgaaaatgtgcaattttgacc 2799683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 30969461 - 30969413
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  30969461 ggtgaagttaacactataacatcaaaagtgttgtgagtaacaccccact 30969413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 2805806 - 2805849
Alignment:
Q  411 cgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  2805806 cgttccgtaatagatgacccatttgaaaatgtgcaattttgacc 2805849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 32110733 - 32110686
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  32110733 tccctccgttccgcaatagataatccatttgaaaatgtgcaattttga 32110686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 32563150 - 32563237
Alignment:
Q  191 gaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||||||||||||| |        | ||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  32563150 gaaaattctatggtgaagtcattaaaatgatttttct-gatgaagttaacactataacatcaaaagtgttgtgagtaacactccactgt 32563237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 15724528 - 15724578
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  15724528 ggtgaagttaacactataacatcaaaagttttgtgagtaacaccccactgt 15724578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 36866800 - 36866850
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  36866800 ggtgaagttaacactataatatcaaaaatattgtgagtaacaccccactgt 36866850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 8466783 - 8466828
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacacccc 274  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  8466783 ggtgaagttaacactgtaacatcaaaagtgttgtgaataacacccc 8466828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 28416663 - 28416614
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  28416663 gtgaagttaacactataatatcaaaagtattgtgagtaacatcccactgt 28416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 36860419 - 36860511
Alignment:
Q  186 ataaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||||  ||||| |        |||||||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  36860419 ataaggaaaattctatggtgaagtcacgaaaatgatttttct-ggtgaagttaacactatagtataaaaaatgttgtgagtaacaccccactgt 36860511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 5837593 - 5837643
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||| ||||||||||  |||||||||||||||| ||||||||||||||    
T  5837593 ggtgaaggtaacactatagcatcaaaagtgttgtgagtaacaccccactgt 5837643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 25501059 - 25501013
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||    
T  25501059 aagttaacactatagcatcaaaagtgttgtgaataacacctcactgt 25501013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 25668688 - 25668737
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  25668688 ggtgaagttaacact-taacatcaaaagtgttgtgagtaacaccccactgt 25668737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 26268112 - 26268162
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||||||||    
T  26268112 ggtgaagttaacactatagcatcaaaagtgttttgagtaacaccccactgt 26268162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 8742024 - 8741979
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacacccc 274  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||    
T  8742024 ggtgaagttaacactatagcatcaaaagtgttgtgagtaacacccc 8741979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 39925206 - 39925255
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||||||||||||||||||||| || ||||||||||    
T  39925206 tccctccgtcccgcaatagatgatccatttgaaaatttgtaattttgacc 39925255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 30788208 - 30788256
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| |||||||| |||| ||||||||||||||| |||||||||    
T  30788208 tccctccgtcccgtaatatatgacccatttgaaaatgtgtaattttgac 30788256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 40133423 - 40133471
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  40133423 ggtgaagttaacattatagtatcaaaaatgttgtgagtaacaccccact 40133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 19119897 - 19119947
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  |||||||||||||  | ||||||||||||||    
T  19119897 ggtgaagttaacactatagcatcaaaagtgttgctagtaacaccccactgt 19119947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 22019670 - 22019716
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacacccca 275  Q
    ||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  22019670 ggtgaagttaaaactatagaatcaaaagtgttgtgagtaacacccca 22019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 35933942 - 35933988
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||  |||||||||||||||| ||||||| ||||    
T  35933942 tgaagttaacactatagaatcaaaagtgttgtgagtaacacctcact 35933988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 20040476 - 20040427
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||| |||| |  |||||||||||||||||||||||    
T  20040476 tccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacc 20040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 31642592 - 31642625
Alignment:
Q  185 tataaggaaaattctatggtgaagtcattaaaat 218  Q
    ||||||||||||||||||||||||| ||||||||    
T  31642592 tataaggaaaattctatggtgaagttattaaaat 31642625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 33402652 - 33402603
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||||||||||  ||| |||||||| ||||||||||    
T  33402652 tccctccgtcccgtaatagatgatctgtttaaaaatgtgtaattttgacc 33402603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 13956480 - 13956432
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| ||| |||| ||||||| ||||||    
T  13956480 tgaagttaacactataacatcaaaactgtagtgagtaacacctcactgt 13956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 27330344 - 27330376
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttg 261  Q
    ||||||||||||||||||| |||||||||||||    
T  27330344 ggtgaagttaacactataacatcaaaagtgttg 27330376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 34347474 - 34347518
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| ||||||||| | ||||||||||||| |||||||||    
T  34347474 tccgttccgcaatagatgacctatttgaaaatgtgtaattttgac 34347518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 7079216 - 7079168
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7079216 ggtgaagttaacactataatatcaaaagtgttgtgagtaacaccccact 7079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 11742492 - 11742442
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  11742492 ggtgaagttaacactatattatcaaaagtgttgtaagtaacaccccactgt 11742442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 47279223 - 47279273
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||    
T  47279223 ggtgaagttaacattatactatcaaaagtgttgtgagtaacaccccactgt 47279273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 38787005 - 38786964
Alignment:
Q  411 cgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  38787005 cgttccgtaatagatgatccatttgaaaatatgcaattttga 38786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 48620672 - 48620721
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  48620672 gtgaagttaacaatataacatcaaaagtgttgtgagtaacaccccactgt 48620721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 3534967 - 3535009
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacacc 272  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  3534967 gtgaagttaacactataacatcaaaagtgttgtgagtaacacc 3535009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 31932243 - 31932194
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  31932243 tccctccgtcccgcaatagatgatctatttgaaaatttgcaattttgacc 31932194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 3309186 - 3309226
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccc 273  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  3309186 aagttaacactataacatcaaaagtgttgtgagtaacaccc 3309226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 279
Target Start/End: Original strand, 1547276 - 1547371
Alignment:
Q  183 tttataaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||| ||||||||||||||||||||||||| | ||| |        ||||||||||||||||||| || |||| |||||||| |||||| |||||||    
T  1547276 tttaaaaggaaaattctatggtgaagtcatgagaatgacttttct-ggtgaagttaacactataacataaaaaatgttgtgagtaacactccactgt 1547371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 12685963 - 12685916
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||| ||| ||||||||||||| || |||||||||||||||||||||    
T  12685963 tcccttcgtcccgtaatagatgacccgtttgaaaatgtgcaattttga 12685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 10648255 - 10648217
Alignment:
Q  416 cgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  10648255 cgtaatagatgatctatttgaaaatgtgtaattttgacc 10648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 32216089 - 32216139
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| ||||||| ||| |||| |||||| |||||||    
T  32216089 ggtgaagttaacactataacatcaaaaatgtagtgagtaacacaccactgt 32216139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 49903743 - 49903701
Alignment:
Q  412 gttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| |||||||||||||||| |||||||| ||||||||||    
T  49903743 gttccgcaatagatgatccatttaaaaatgtgaaattttgacc 49903701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 28012047 - 28012080
Alignment:
Q  187 taaggaaaattctatggtgaagtcattaaaataa 220  Q
    |||||||||||||||||||||||||||| |||||    
T  28012047 taaggaaaattctatggtgaagtcattagaataa 28012080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 29253486 - 29253531
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  29253486 tccgtcccgcaatagatgatctatttgaaaatttgcaattttgacc 29253531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 41855786 - 41855737
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||| |||| | |||||||||| |||||||||||||    
T  41855786 tccctccgtcccgtaataaatgacctatttgaaaatttgcaattttgacc 41855737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 9903194 - 9903146
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| ||| |||| ||||||||| ||||    
T  9903194 tgaagttaacactataacatcaaaactgtagtgagtaacaccccgctgt 9903146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 16415679 - 16415723
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccc 273  Q
    ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  16415679 ggtgaagttaacactatagcatcaaaagtgtagtgagtaacaccc 16415723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 28490163 - 28490211
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| ||| ||||||||| | |||||||||| ||||||||||||    
T  28490163 tccctccgtcccgcaatagatgacctatttgaaaatttgcaattttgac 28490211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 42721027 - 42721063
Alignment:
Q  182 ttttataaggaaaattctatggtgaagtcattaaaat 218  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  42721027 ttttatatggaaaattctatggtgaagtcatgaaaat 42721063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 5657628 - 5657579
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  5657628 gtgaagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 5657579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 27421527 - 27421477
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  27421527 ggtgaagttaacactataacatcaaaagtgttgtgagtaacactccactgt 27421477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 18756606 - 18756651
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  18756606 tccgttccgtaatagatgacccatttgaaaatatgcaattttgacc 18756651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 43686054 - 43686098
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccc 273  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||    
T  43686054 ggtgaagttaacactataatatcaaaaatgttgtgagtaacaccc 43686098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 47713496 - 47713444
Alignment:
Q  402 taatccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| || || |||||||||| ||||||||||||||||||||||||||    
T  47713496 taatccctctgtcccataatagatgacccatttgaaaatgtgcaattttgacc 47713444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 8861301 - 8861348
Alignment:
Q  232 gaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||    
T  8861301 gaagttaacactatagcatcaaaagtgttatgaataacaccccactgt 8861348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 30055499 - 30055590
Alignment:
Q  188 aaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||| | ||| |        | ||||||||||||||||||||||||| |||  ||| ||||||||||||||    
T  30055499 aaggaaaattctatggtgaagtcataagaatgactttttttgatgaagttaacactataatatcaaaattgtaatgagtaacaccccactgt 30055590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 32222553 - 32222600
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||    
T  32222553 tccctccgttccgtaatagatgacccatctcaaaatgtgcaattttga 32222600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 452
Target Start/End: Complemental strand, 40818754 - 40818711
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  40818754 tccgtcccgtaatagatgatctatttgaaaatgtgcaattttga 40818711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 12165765 - 12165815
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  ||| |||||||||||| ||||||||||||||    
T  12165765 ggtgaagttaacactatagcatccaaagtgttgtgagtaacaccccactgt 12165815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 29173553 - 29173603
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| || ||||||||||||||||| |||||| |||||||    
T  29173553 ggtgaagttaacactgtagtatcaaaagtgttgtgagtaacactccactgt 29173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 34362292 - 34362246
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  34362292 aagttaacactatagcatcaaaagtgttgtgagtaacaccccactgt 34362246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 31579256 - 31579167
Alignment:
Q  189 aggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||||||||| | |||||        ||||||||||||||||||| ||||||| |||  ||| ||||||||||||||    
T  31579256 aggaaaattctatggtgaagtcataagaataattttttt-ggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgt 31579167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 4582932 - 4582980
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  4582932 ggtgaagttaatactatagtatcaaaaatgttgtgagtaacaccccact 4582980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 22687254 - 22687302
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| |||||||| |||||| |||||||    
T  22687254 tgaagttaacactataacatcaaaaatgttgtgagtaacactccactgt 22687302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 6546533 - 6546580
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||||    
T  6546533 gtgaagttaacactatagcatcaaaagtgttgcgagtaacaccccact 6546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 26980336 - 26980383
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||||||| ||||  |||||||||||||||| |||||||||||    
T  26980336 ggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccccac 26980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 12390778 - 12390728
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||  ||| ||||| ||||||||    
T  12390778 ggtgaagttaacactataacatcaaaagtgtaatgagtaacatcccactgt 12390728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 21991649 - 21991699
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  ||||||| ||||| || ||||||||||||||    
T  21991649 ggtgaagttaacactatagcatcaaaattgttgcgagtaacaccccactgt 21991699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 38850708 - 38850754
Alignment:
Q  408 ctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||||||    
T  38850708 ctccgttccacaatagatgacccatttgaaaatgtgtaattttgacc 38850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 9136723 - 9136674
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||| | ||| |||||||||||||||||| |||||| ||||||||||    
T  9136723 tccctccatcccgcaatagatgatccatttgataatgtgtaattttgacc 9136674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 16807207 - 16807158
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||| |||| |  |||||||||||||||||||||||    
T  16807207 tccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacc 16807158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 31496706 - 31496657
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||  |||||||||| || ||||||||||||| |||||||||||    
T  31496706 tccctccgtctcgtaatagataattcatttgaaaatgtacaattttgacc 31496657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 36819619 - 36819668
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||||| |||| |||| |  |||||||||||||||||||||||    
T  36819619 tccctccgttccgcaataaatgacctgtttgaaaatgtgcaattttgacc 36819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 37101087 - 37101038
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| | ||||||||||||| ||||||||||    
T  37101087 tccctccgtcccgcaatagatgacctatttgaaaatgtgtaattttgacc 37101038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 38069054 - 38069103
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||||| |||| |||| |  |||||||||||||||||||||||    
T  38069054 tccctccgttccgcaataaatgacctgtttgaaaatgtgcaattttgacc 38069103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 44598378 - 44598419
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacac 271  Q
    |||||||||| ||||||||||||||| |||||||| ||||||    
T  44598378 gtgaagttaatactataatatcaaaaatgttgtgagtaacac 44598419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 23111203 - 23111251
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||||| ||||||| | |||||| |||||| |||||    
T  23111203 ggtgaagttaacactataacatcaaaaatattgtgagtaacacaccact 23111251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 30462282 - 30462234
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| ||| |||| ||||||  ||||||||||||||||||||||    
T  30462282 tccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgac 30462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 48928444 - 48928396
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||| |||||||||| ||||||||||| |||| || |||||||||    
T  48928444 ggtgaagtcaacactataacatcaaaagtgtagtgagtagcaccccact 48928396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 48928711 - 48928663
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    |||||||| |||||||||| ||||||||||| |||| || |||||||||    
T  48928711 ggtgaagtcaacactataacatcaaaagtgtagtgagtagcaccccact 48928663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 42386 - 42434
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  42386 ggtgaagttaacactataacatcaaaagtgttgtgagtaacaccccact 42434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 36695117 - 36695069
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36695117 tgaagttaacactataatatcaaaaatgttgtgagtaacaccccactgt 36695069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 465879 - 465929
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  465879 ggtgaagttaacacgataacatcaaaagtgttgtgagtaacaccccactgt 465929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 38644019 - 38644065
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  38644019 aagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 38644065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 11727061 - 11727109
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  11727061 ggtgaagttaacactataacatcaaaagtgttgtaagtaacaccccact 11727109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 13307660 - 13307708
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  13307660 ggtgaagttaacactataacatcaaaagtgttgtgagtaacacctcact 13307708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 40862456 - 40862507
Alignment:
Q  229 ggtgaagttaacactataatatc-aaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  40862456 ggtgaagttaacactataatatcaaaaaatgttgtgagtaacaccccactgt 40862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 9864185 - 9864235
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  9864185 ggtgaaattaacactatagtatcaaaaatgttgtgagtaacaccccactgt 9864235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 27082991 - 27082941
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  ||||||||||| |||| ||||||||||||||    
T  27082991 ggtgaagttaacactatagcatcaaaagtgtagtgagtaacaccccactgt 27082941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 3466286 - 3466335
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||||||||||||    
T  3466286 tccctccgtcccgcaatagatgacccatttgaaaatgcgcaattttgacc 3466335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 4960158 - 4960203
Alignment:
Q  409 tccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||    
T  4960158 tccgtcccgtaatagatgatctatttgaaaatttgcaattttgacc 4960203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 8123658 - 8123707
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||||| | |||||||||||||||| |||||||| ||||||||||    
T  8123658 tccctccgttctgcaatagatgatccatttaaaaatgtgtaattttgacc 8123707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 44887773 - 44887724
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||| |||||| ||||||||||||||||||||||||    
T  44887773 tccctccgtcccgcaataaatgatctatttgaaaatgtgcaattttgacc 44887724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 12876148 - 12876196
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||||||| |||| |||||||| |||||||| |||||    
T  12876148 tgaagttaacactataatataaaaaatgttgtgagtaacacccaactgt 12876196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 453
Target Start/End: Original strand, 66942 - 66977
Alignment:
Q  418 taatagatgatccatttgaaaatgtgcaattttgac 453  Q
    |||||||||||||||||||||||||| |||||||||    
T  66942 taatagatgatccatttgaaaatgtgtaattttgac 66977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 24823425 - 24823378
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||||||||||||||||||||||||||  |  |||||||||||    
T  24823425 ggtgaagttaacactataatatcaaaagtgttaagtgtaacaccccac 24823378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 44717299 - 44717346
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||| ||| ||| ||||||||||||||||||||| ||||||||    
T  44717299 tccctccgtcccgcaatggatgatccatttgaaaatgtgtaattttga 44717346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 8496941 - 8496895
Alignment:
Q  408 ctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| | ||||||| ||| ||||||||||||||||||||||||||    
T  8496941 ctccgtcctgtaatagttgacccatttgaaaatgtgcaattttgacc 8496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 16447024 - 16446978
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  16447024 aagttaacactataacatcaaaattgtagtgagtaacaccccactgt 16446978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 34952180 - 34952134
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||||||    
T  34952180 aagttaacactatatcatcaaaagtgttgtgagtaacagcccactgt 34952134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 37970672 - 37970622
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| ||||||| |||  ||| ||||||||||||||    
T  37970672 ggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgt 37970622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 20671259 - 20671308
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||  || ||||||||||| ||||||||||||| ||||||||||    
T  20671259 tccctccgtcgcgcaatagatgatcaatttgaaaatgtgtaattttgacc 20671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 28583361 - 28583312
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| |  |||||||||||||||||||||||    
T  28583361 tccctccgtcccgcaatagatgacctttttgaaaatgtgcaattttgacc 28583312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 40035304 - 40035337
Alignment:
Q  419 aatagatgatccatttgaaaatgtgcaattttga 452  Q
    |||||||||||||||||||||| |||||||||||    
T  40035304 aatagatgatccatttgaaaatttgcaattttga 40035337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 44039842 - 44039875
Alignment:
Q  419 aatagatgatccatttgaaaatgtgcaattttga 452  Q
    |||| |||||||||||||||||||||||||||||    
T  44039842 aataaatgatccatttgaaaatgtgcaattttga 44039875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 44947021 - 44947069
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| |||||| |||||||||||||||||||    
T  44947021 tccctccgt-ccgcaatagatgacccatttaaaaatgtgcaattttgacc 44947069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 43025739 - 43025787
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||  |||| ||||||||||||||||| ||| ||||||||    
T  43025739 ggtgaagttaacgatatagtatcaaaagtgttgtgattaataccccact 43025787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 4205156 - 4205204
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  4205156 tgaagttaacactataatatcaaaaatgttctgaataacaccccactgt 4205204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 34948267 - 34948220
Alignment:
Q  232 gaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  34948267 gaagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 34948220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 39397907 - 39398002
Alignment:
Q  179 attttttataaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacacccca 275  Q
    |||||||| | ||||||||||||||||||||||||| ||| |        ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  39397907 attttttaaatggaaaattctatggtgaagtcattagaatgacttttat-ggtgaagttaacactataacattaaaagtgttgtgagtaacacccca 39398002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 7703555 - 7703605
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  7703555 ggtgaagttaacactataacatcaaaagtgttgtcagtaacaccccactgt 7703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 37287776 - 37287822
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  37287776 aagttaacactataacatcaaaagtgttgtgagtaacaccccactgt 37287822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 29821063 - 29821100
Alignment:
Q  415 ccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29821063 ccgtaatagatgatccatttgaaaatgtgcaattttga 29821100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 42185277 - 42185326
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  42185277 tccctccgtcccgcaatagatgatccatttgaaaatttgcaattttgacc 42185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 17167753 - 17167801
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  17167753 tgaagttaacattataatatcaaaaatgttgtgagtaacaccccactgt 17167801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 17173330 - 17173378
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  17173330 tgaagttaacattataatatcaaaaatgttgtgagtaacaccccactgt 17173378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 37775670 - 37775757
Alignment:
Q  191 gaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||| ||||||||||||||||| |        |||||||||| ||||||||||| |||| |||||||| ||||||||||||||    
T  37775670 gaaaattctacggtgaagtcattaaaatgattttttt-ggtgaagttagcactataatattaaaaatgttgtgagtaacaccccactgt 37775757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 54499412 - 54499365
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccac 276  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||    
T  54499412 ggtgaagttaacactatagcatcaaaagtgttgtgagtaacaccccac 54499365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 4598031 - 4598080
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  4598031 ggtgaagttaacactataacatcaaa-gtgttgtgagtaacaccccactgt 4598080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 23761114 - 23761160
Alignment:
Q  233 aagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  23761114 aagttaacactataacatcaaaagtgttgtgagtaacacctcactgt 23761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 30002837 - 30002747
Alignment:
Q  188 aaggaaaattctatggtgaagtcattaaaataannnnnnnnggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||| |||||||||||||||||||||| |        ||||||||||||||| ||  |||||||||||||||| ||||||| ||||||    
T  30002837 aaggaaaactctatggtgaagtcattaaaatgatttttct-ggtgaagttaacactgtagcatcaaaagtgttgtgagtaacacctcactgt 30002747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 38011892 - 38011942
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||| |||||||||| ||||||||||| ||||||| |||||||||||    
T  38011892 ggtgaagtcaacactataacatcaaaagtgtagtgaatagcaccccactgt 38011942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 43447168 - 43447217
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||| ||||||  |||||||||||||||||||||||    
T  43447168 tccctccgtcccgtaataaatgatctgtttgaaaatgtgcaattttgacc 43447217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 48336488 - 48336439
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  48336488 tccctccgtcccgcaatagatgacacatttgaaaatgtgcaattttgacc 48336439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 19089624 - 19089576
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||||||||| |||  ||| ||||||||||||||    
T  19089624 tgaagttaacactataatatcaaaattgtaatgagtaacaccccactgt 19089576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 47253787 - 47253831
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccc 273  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  47253787 ggtgaagttaacactatatcatcaaaagtgttgtgagtaacaccc 47253831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 1613275 - 1613229
Alignment:
Q  408 ctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||| ||||||||||||| | ||||||||||||| ||||||||||    
T  1613275 ctccgtcccgtaatagatgacctatttgaaaatgtgtaattttgacc 1613229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 40411669 - 40411620
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| |||||||| |||| |  |||||||||||||||||||||||    
T  40411669 tccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacc 40411620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 49376005 - 49376054
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactg 278  Q
    ||||||||||||| ||||  ||||||||||| |||| |||||||||||||    
T  49376005 ggtgaagttaacattatagcatcaaaagtgtcgtgagtaacaccccactg 49376054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 50764772 - 50764818
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||||||    
T  50764772 tgaagttaacacta--acatcaaaagtgttgtgagtaacaccccactgt 50764818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 55241276 - 55241227
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||| |||||| |||||||| ||||| || ||||||||||||||    
T  55241276 gtgaagttaatactatattatcaaaattgttgcgagtaacaccccactgt 55241227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 29584371 - 29584339
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttg 261  Q
    ||||||||||||||||||| |||||||||||||    
T  29584371 ggtgaagttaacactataacatcaaaagtgttg 29584339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 32592133 - 32592181
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||||||||||| | |||||||||||||| || |||||| |||||||    
T  32592133 tgaagttaacactacagtatcaaaagtgttgagagtaacactccactgt 32592181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 18013526 - 18013478
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18013526 tccctccgtcccgtaatagatgacccatttgaaaatgtgcaattttgac 18013478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 44891535 - 44891585
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  44891535 ggtgaagttaacactataacatcaaaagtgttgtgagtaacatcccactgt 44891585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 1334351 - 1334304
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  1334351 tccctccgttccgcaatagatgacccatttgaaaatgtgtaattttga 1334304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 34132964 - 34133014
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    |||||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  34132964 ggtgaaattaacactatagtatcaaaaatgttgtgagtaacaccccactgt 34133014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 44186648 - 44186598
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||| ||||    
T  44186648 ggtgaagttaacactatagcatcaaaagtgttgtgagtaacaccccgctgt 44186598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 33698218 - 33698263
Alignment:
Q  230 gtgaagttaacactataatatcaaaagtgttgtgaataacacccca 275  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||    
T  33698218 gtgaagttaacactataacatcaaaaatgttgtgagtaacacccca 33698263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 4015491 - 4015539
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  4015491 tgaagttaacactatagcatcaaaagtgttgtgagtaacacccaactgt 4015539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 37157739 - 37157787
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  37157739 tgaagttaacactataacatcaaaattgtagtgagtaacaccccactgt 37157787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 37203098 - 37203146
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  37203098 tgaagttaacactataacatcaaaattgtagtgagtaacaccccactgt 37203146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 39282637 - 39282672
Alignment:
Q  183 tttataaggaaaattctatggtgaagtcattaaaat 218  Q
    |||||||||||||||||||||||||||||| |||||    
T  39282637 tttataaggaaaattctatggtgaagtcatgaaaat 39282672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 2613921 - 2613967
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccact 277  Q
    ||||||||||||||||| | |||||||||||||| ||||||| ||||    
T  2613921 tgaagttaacactataacaccaaaagtgttgtgagtaacaccacact 2613967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 21193635 - 21193685
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||| |   |||||||||||||||| ||||||||||||||    
T  21193635 ggtgaagttaacactgttgaatcaaaagtgttgtgagtaacaccccactgt 21193685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 29099384 - 29099434
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| || |||| ||| |||| ||||||||||||||    
T  29099384 ggtgaagttaacactataacataaaaaatgtcgtgagtaacaccccactgt 29099434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 35844355 - 35844405
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||| ||||||    
T  35844355 ggtgaagttaacactataacaacaaaaatgttgtgagtaacacctcactgt 35844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 45174532 - 45174566
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtg 263  Q
    ||||||||||||||||||| |||||||||||||||    
T  45174532 ggtgaagttaacactataacatcaaaagtgttgtg 45174566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 47481551 - 47481601
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||||| ||||||| |||  ||| ||||||||||||||    
T  47481551 ggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgt 47481601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 901144 - 901095
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  901144 tccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacc 901095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 2643325 - 2643276
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| | |||||||||| |||||||||||||    
T  2643325 tccctccgtcccgcaatagatgacctatttgaaaatttgcaattttgacc 2643276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 25579768 - 25579809
Alignment:
Q  229 ggtgaagttaacactataatatcaaaagtgttgtgaataaca 270  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  25579768 ggtgaagttaatactatagcatcaaaagtgttgtgaataaca 25579809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 29720398 - 29720447
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  29720398 tccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacc 29720447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 52094148 - 52094103
Alignment:
Q  407 cctccgttccgtaatagatgatccatttgaaaatgtgcaattttga 452  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||    
T  52094148 cctccgttccgcaatagatgactcatttgaaaatttgcaattttga 52094103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 2007964 - 2008012
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||   | ||||||||||||| ||||||||||||||    
T  2007964 tgaagttaacactatagcgttaaaagtgttgtgagtaacaccccactgt 2008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 11466855 - 11466903
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||| ||||||| |||  ||||||||||| ||||||||||||||    
T  11466855 tgaagttaagactataacatcgcaagtgttgtgagtaacaccccactgt 11466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 36594458 - 36594426
Alignment:
Q  422 agatgatccatttgaaaatgtgcaattttgacc 454  Q
    |||||||||||||||||||||| ||||||||||    
T  36594458 agatgatccatttgaaaatgtgtaattttgacc 36594426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 50673680 - 50673728
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgac 453  Q
    ||||||||||||| |||| |||| |  ||||||||||||||||||||||    
T  50673680 tccctccgttccgcaataaatgacctgtttgaaaatgtgcaattttgac 50673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 24010 - 23961
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  24010 tccctccgtcccgcaatagatgacacatttgaaaatgtgcaattttgacc 23961  T

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Target: scaffold0289 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 9153 - 9185
Alignment:
Q  420 atagatgatccatttgaaaatgtgcaattttga 452  Q
    |||||||||||||||||||||||||||||||||    
T  9153 atagatgatccatttgaaaatgtgcaattttga 9185  T

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Target: scaffold0500 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 736 - 687
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||  ||| ||||||||| |||||||||||| |||||||||||||    
T  736 tccctccgccccgcaatagatgacccatttgaaaatatgcaattttgacc 687  T

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Target: scaffold0283 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 2999 - 3047
Alignment:
Q  405 tccctccgttccgtaatagatgatccatttgaaaatgtgcaattttgacc 454  Q
    ||||||||| ||| ||||||||| |||||| |||||||||||||||||||    
T  2999 tccctccgt-ccgcaatagatgacccatttaaaaatgtgcaattttgacc 3047  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 7927 - 7975
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||||||||| ||||||| |||  ||| ||||||||||||||    
T  7927 tgaagttaacactataacatcaaaattgtaatgagtaacaccccactgt 7975  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 94528 - 94480
Alignment:
Q  231 tgaagttaacactataatatcaaaagtgttgtgaataacaccccactgt 279  Q
    ||||||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  94528 tgaagttaacattataacatcaaaattgtagtgagtaacaccccactgt 94480  T

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