View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_high_29 (Length: 429)

Name: NF2622_high_29
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_high_29
NF2622_high_29
[»] chr1 (1 HSPs)
chr1 (13-429)||(36684-37101)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 37101 - 36684
Alignment:
Q  13 catcaaaaccgattttagcgaaaacttcccactacagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37101 catcaaaaccgattttagcgaaaacttcccactgcagtagtaaagcaggtcatcgagactcgggcccataagttcaagaactagaacattatagtctccg 37002  T
Q  113 tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaa-tattgtgaggg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37001 tcagtaccaaaccatttcattcttggaataccaccttaaattccattactataataaattagaaaggactgagaaaacaaagggaaaaatattgtgaggg 36902  T
Q  212 aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36901 aaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagtagctgtggttgttga 36802  T
Q  312 gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36801 gttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaaagatgtaaattaaca 36702  T
Q  412 atcaaaatttaaacatgc 429  Q
    ||||||||||||||||||    
T  36701 atcaaaatttaaacatgc 36684  T

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