View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_33 (Length: 409)
Name: NF2622_high_33
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 41 - 394
Target Start/End: Original strand, 37195097 - 37195453
Alignment:
| Q |
41 |
catcatcatcttttaaaccacccatcttttgctccaatccttcaaatctctctcgaagactcttccttccttctgtttcgggtatctgggacgccatcac |
140 |
Q |
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| T |
37195097 |
catcatcatcttttaaaccacccatcttttgctccaatccttcaaatctctctcgaagactcttccttccttctgtttccggtatctgggacgccatcac |
37195196 |
T |
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| Q |
141 |
cggcggcagcggcaataacaacaccaatgaagcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195197 |
cggcggcagcggcaataacaacaccaatgaagcccttctcgcaattcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctt |
37195296 |
T |
|
| Q |
241 |
taatggtgagttgtaac---taactagtactcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattagatcctcgtca |
337 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37195297 |
taatggtgagttgtaactagtaactagtactcattgtttagggtgaagttttggggtctgttgtggagtttgacaaagcaattcaattggatcctcgtca |
37195396 |
T |
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| Q |
338 |
aaaagcgtgtaggtttattcgtttttccgaactttcgtaaatatcaattgaatttgg |
394 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195397 |
aaaggcgtgtaggtttattcgtttttccgaactttcgtaaatatcaattgaatttgg |
37195453 |
T |
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