View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_35 (Length: 402)
Name: NF2622_high_35
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 24777618 - 24778005
Alignment:
| Q |
15 |
agcatcatcaggctgcaacatcaaccaccaaaaacaaccatgtaaaaaatgtcaattagcatcaatttcagcaatcaaacacaaataaaacacattagca |
114 |
Q |
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| T |
24777618 |
agcatcatcaggctgcaacatcaaccaccaaaaacaaccatgtaaaaaatgtcaattagcgtcaatttcagcaatcaaacacaaataaaacacattagca |
24777717 |
T |
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| Q |
115 |
ttttagctacaagcctgtaacgcttataaaaagaccccatggttggaacatgtgataaaaaatgaatcaatatctcaccttgtccacagtagtgttctgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777718 |
ttttagctacaagcctgtaacgcttataaaaagaccccatggttggaacatgtgataaaaaatgaatcaatatctcaccttgtccacagtagtgttctgc |
24777817 |
T |
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| Q |
215 |
ctgcaaacaatgtttgcagctccaatgtcacccttggttgaaaacttcacgccctccttagtaaccgagatgacaactgcaacacatcgccaaattacaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777818 |
ctgcaaacaatgtttgcagctccaatgtcacccttggttgaaaacttcacgccctccttagtaaccgagatgacaactgcaacacatcgccaaattacaa |
24777917 |
T |
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| Q |
315 |
atattaatcaacattacactcaaaagaacagtcaagcattagaagaaaatcatataacagatgaataaaagtgattaccagtgtcacc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777918 |
atattaatcaacattacactcaaaagaacagtcaagcattagaagaaaatcatataacagatgaataaaagtgattaccagtgtcacc |
24778005 |
T |
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