View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_high_39 (Length: 382)
Name: NF2622_high_39
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 34928005 - 34927660
Alignment:
| Q |
20 |
tctattgtaatatagagaaaagggtagttttgaatcttgaggagagtatttaattctactcttcttctgaagtgtttgttgactatctttgagtttctct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34928005 |
tctattgtaatatagagaaaagggtagttttgaatcttgaggagagtatttaattctactcttcttgtgaagtgtttgttgactatctttgagtttctct |
34927906 |
T |
|
| Q |
120 |
tggatatgtaatttaagtgatttttgttcaatcactaactagtttatttgtcatccattacaatatatgcaaaagttcttgataaattctttgaaatgta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927905 |
tggatatgtaatttaagtgatttttgttcaatcactaactagtttatttgtcatccattacaatatatgcaaaagttcttgataaattctttgaaatgta |
34927806 |
T |
|
| Q |
220 |
aattcttttttctggattcatttattcattttcttcatcttgagcctgatgcgtgtgctcaacaaataactacaccatcttcaagttttctgtttagcat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927805 |
aattcttttttctggattcatttattcattttcttcatcttgagcctgatgtgtgtgctcaacaaataactacaccatcttcaagttttctgtttagcat |
34927706 |
T |
|
| Q |
320 |
gatattcatgtctccctgccccgagttctattgatatttacgccta |
365 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34927705 |
gatattcatgtctccctgctctgagttctattgatatttacgccta |
34927660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University