View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_44 (Length: 350)
Name: NF2622_high_44
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 46866101 - 46866307
Alignment:
| Q |
19 |
ctaaggggtgatatttcttatttgtttgtgcttccaaagttggtgctggatgcaatgttcttgattctgagttgtggagattttttcatggtctaaaaat |
118 |
Q |
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| T |
46866101 |
ctaaggggtgatatttcttatttgtttgtgcttccaaagttggtgctggatgcaatgttcttgattctgagttgtggagattttttcatggtctaaaaat |
46866200 |
T |
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| Q |
119 |
cgcttggagtaaaggctttagagtatgtcttctgattcccaaactatgggatggtcgttgaccgtctcatgcttcttacatccttgttttcaagattcac |
218 |
Q |
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| T |
46866201 |
cgcttggagtaaaggctttagagtatgtattctgattcccaaactaagggatggtcgttgaccgtctcatgcttcttacatccttgttttcaagattcac |
46866300 |
T |
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| Q |
219 |
tgcattt |
225 |
Q |
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||||||| |
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| T |
46866301 |
tgcattt |
46866307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 46867141 - 46867262
Alignment:
| Q |
223 |
ttttggtgttgtcaatcaaga-ctatagaaagatatgaactctttataatttttataagaaaaactacgagtgaataggtattttggtcttgaaatttgt |
321 |
Q |
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| T |
46867141 |
ttttggtgttgtcaatcaagagctatagaaagatatgaactctttctaatttttataagaaaaactacgagtgaataggtattttggtccttaaatttgt |
46867240 |
T |
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| Q |
322 |
atgcacaggttaatttcatctc |
343 |
Q |
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|| || ||||||||| ||||| |
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| T |
46867241 |
atacatcggttaattttatctc |
46867262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 46886592 - 46886657
Alignment:
| Q |
54 |
aaagttggtgctggatgcaa-tgttcttgattctgagttgtggagattttttcatggtctaaaaat |
118 |
Q |
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| T |
46886592 |
aaagttggtgctgcacgcaaatgttctagattctgagttgtggagaatttttcatggcctacaaat |
46886657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 7001405 - 7001369
Alignment:
| Q |
290 |
gagtgaataggtattttggtcttgaaatttgtatgca |
326 |
Q |
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| T |
7001405 |
gagtgaataggcattttggtcttcaaatttgtatgca |
7001369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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