View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_45 (Length: 349)
Name: NF2622_high_45
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_45 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 7832374 - 7832710
Alignment:
| Q |
13 |
attctataatgtgtaatgctgttttgcttgcgtcgatggattcgttagtagttattatatgcttaaatcatgtactatttattttaagcatgaatgaaga |
112 |
Q |
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| T |
7832374 |
attctataatgtgtaatgctgttttgcttgcgtcgatggattcgttagtagttattatatgcttaaatcatgtactatttattttaagcatgaatgaaga |
7832473 |
T |
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| Q |
113 |
ctttctattgtgtgttattttgttcatttatatgtttgaagacactgattatgtgttccttacatcaaagatatcatattcctctcctcggagtgtttgt |
212 |
Q |
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| T |
7832474 |
ctttctattgtgtgttattttgttcatttatatgtttgaagacacagattacgtgttccttacatcaaagatatcatattcctctcctcggagtgtttgt |
7832573 |
T |
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| Q |
213 |
aataaacagaatctaggtttagccaaagatcttcgacggggactgtgaatatcggctatttggctgggaactgtgacttttttaagctagcaatcagtgt |
312 |
Q |
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| T |
7832574 |
aataaacagaatctaggtttagccgaagatcttcgacggggactgtgcatattggctatttggctgggaactgtgacttttttaagctagcaatcagtgt |
7832673 |
T |
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| Q |
313 |
aatttttaggcaccagagatatgaatacgatttagtt |
349 |
Q |
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| T |
7832674 |
aatttttcggcaccagagatatgaatacgatttagtt |
7832710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 45239541 - 45239858
Alignment:
| Q |
13 |
attctataatgtgtaatgctgttttgcttgcgtcgatggattcgttagtagttattatatgcttaaatcatgtactatttattttaagcatgaatgaaga |
112 |
Q |
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| T |
45239541 |
attctaaaacgtgtaatgttgtttggctttcaatgattgattcgttagtagttattatgtgtttaaatcatgtgctatttatttgaagcatgaatgaaga |
45239640 |
T |
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| Q |
113 |
ctttctattgtgtgttattttgttcatttatatgtttgaagacactgattatgtgttccttacatcaaagatatcatattcctctcctcggagtgtttgt |
212 |
Q |
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| T |
45239641 |
ttttctattgtgtgtgattttgttcatttatatgtttgaagacacagagtatgtgttccttacatcaaagatatcatattcc-----------tgtttgt |
45239729 |
T |
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| Q |
213 |
aataaacagaatctaggtttagccaaagatcttcgacggggactgtgaatatcggctatttggctgggaactgtgacttttttaagctagcaatcagtgt |
312 |
Q |
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| T |
45239730 |
aacaaatagaatctaggtttacccgaagatcttcgacagggactgtgcata--------ttgcctggggactgtgccctttttaagctagcaatcagtgt |
45239821 |
T |
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| Q |
313 |
aatttttaggcaccagagatatgaatacgatttagtt |
349 |
Q |
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| T |
45239822 |
aaattttaggcaccagagatatgaatacgatttagtt |
45239858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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