View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_high_51 (Length: 332)

Name: NF2622_high_51
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_high_51
NF2622_high_51
[»] chr7 (1 HSPs)
chr7 (1-323)||(47895374-47895697)
[»] chr1 (2 HSPs)
chr1 (1-323)||(31213850-31214172)
chr1 (1-323)||(31219605-31219927)
[»] chr6 (1 HSPs)
chr6 (20-176)||(4960014-4960170)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 47895697 - 47895374
Alignment:
Q  1 caagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895697 caagtgccttgcttttgaaccttcattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcc 47895598  T
Q  101 tatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatac-nnnnnnnnctcgtcaaaaa 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  47895597 tatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacttttttttcctcgtcaaaaa 47895498  T
Q  200 gtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895497 gtttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacacc 47895398  T
Q  300 ccagaagaacaacgaatcattcat 323  Q
    | ||||||||||||||||||||||    
T  47895397 ctagaagaacaacgaatcattcat 47895374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 31213850 - 31214172
Alignment:
Q  1 caagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  31213850 caagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagcttccc 31213949  T
Q  101 tatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnnctcgtcaaaaag 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  31213950 tatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaaaag 31214049  T
Q  201 tttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31214050 tttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacaccc 31214149  T
Q  301 cagaagaacaacgaatcattcat 323  Q
     ||||||||||||||||||||||    
T  31214150 aagaagaacaacgaatcattcat 31214172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 31219605 - 31219927
Alignment:
Q  1 caagtgccttgcttttgaacctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  31219605 caagtgccttgcttttgaacctttattctctcagagatcatcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagcttccc 31219704  T
Q  101 tatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnnctcgtcaaaaag 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  31219705 tatactctaaggcttcctcctgtctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaaaag 31219804  T
Q  201 tttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219805 tttctgctgcaactgcaaccataattctttctctttcatctccagcattctctttacagaagaatccactttcttctcctttcgatcttggaatacaccc 31219904  T
Q  301 cagaagaacaacgaatcattcat 323  Q
     ||||||||||||||||||||||    
T  31219905 tagaagaacaacgaatcattcat 31219927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 4960014 - 4960170
Alignment:
Q  20 cctttattctctcagagatcatactcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctc 119  Q
    ||||||||||||||||  || |||||| | ||||||||| ||   ||| ||| ||||||||| ||||||||||   || ||||||||| |||||||||||    
T  4960014 cctttattctctcagacttcgtactcaaagcttgctcttcttttccaaccttcgtttccctatggttgacttcgatttccctatactccaaggcttcctc 4960113  T
Q  120 ctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagctcaaa 176  Q
    ||  || ||||||| || |   |||||||||||||||||||||||||||||||||||    
T  4960114 cttgctgctaaactcctcagctagggatttccgcttttgttccatttcaagctcaaa 4960170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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