View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_high_52 (Length: 331)
Name: NF2622_high_52
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_52 |
 | |
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| [»] scaffold0001 (3 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 21533785 - 21534096
Alignment:
| Q |
3 |
aaaacaggatttatttccccttttttattttcaatcaaaccaacaaagcctttt-tctatatatgaagaatgttcggcaccccaacagaggaaacatggc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533785 |
aaaacaggatttatttccccttttttattttcaatcaaaccaacaaagccttttttctatatatgaagaatgttcggcaccccaacagaggaaacatggc |
21533884 |
T |
|
| Q |
102 |
caggggtcactactttatgtgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaatatatgagttatttttcacca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533885 |
caggggtcactactttatgtgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaatatatgagttatttttcacca |
21533984 |
T |
|
| Q |
202 |
attgtcctgttattggatcttgcttatgtgcctctgtgcaactgtgtgtactgtaggacctgtcatcaatttttcctccttttgatccaactggtcttaa |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533985 |
attgtcctgttattggatcttgcttatgtgcctctgtgcaactgtgtgtactgtaggacctgtcatcaatttttcctccttttgatccaactggtcttaa |
21534084 |
T |
|
| Q |
302 |
tcttctaatggt |
313 |
Q |
| |
|
|||||||||||| |
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|
| T |
21534085 |
tcttctaatggt |
21534096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 27811969 - 27811909
Alignment:
| Q |
121 |
tgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
27811969 |
tgctaaccttcaaacctatcccaaatttaaaccaatggtacccaattctcacttctcaaat |
27811909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 2178 - 2477
Alignment:
| Q |
10 |
gatttatttccccttttttattttcaatcaaaccaacaaagcctttttctatatatgaagaatgttcggcaccccaacagaggaaacatggccaggggtc |
109 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
2178 |
gatttatttccccgtttttgttttcaatcgaaccaacaaagcctttttctatatatgaaaaatgttcgataccccaacagaggaaacatggcc-tgggtc |
2276 |
T |
|
| Q |
110 |
actactttatgtgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaat--atatgagttatttttcaccaattgtc |
207 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
2277 |
actactttttgttctaaccttcaaacctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcaccaattgtc |
2376 |
T |
|
| Q |
208 |
ctgttattggatcttgcttatgtgcctctgtgcaactgtgtgtactgtaggacctgtcatcaatttttcctccttttgatccaactggtcttaatcttct |
307 |
Q |
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|
|||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||| |
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|
| T |
2377 |
ctgttattggatattgcttatgtgcctccgtgcaac--tctgtactgtaggacctgttatcattttttcctgctcttgatccaactggtcttaatcttct |
2474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 9784 - 10078
Alignment:
| Q |
3 |
aaaacaggatttatttccccttttttattttcaatcaaaccaacaaagcctttttctatatatgaagaatgttcggcaccccaacagaggaaacatggcc |
102 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
9784 |
aaaacatgatttatttccccgtttttgttttcaatcgaaccaacaaagcctttttctatatatgaaaaatgtttgataccccaacagaggaaacatggcc |
9883 |
T |
|
| Q |
103 |
aggggtcactactttatgtgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaat--atatgagttatttttcacc |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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|
| T |
9884 |
-tgggtcactactttttgttctaaccttcaaacctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcacc |
9982 |
T |
|
| Q |
201 |
aattgtcctgttattggatcttgcttatgtgcctctgtgcaactgtgtgtactgtaggacctgtcatcaatttttcctccttttgatccaactggtct |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
9983 |
aattgtcctgttattggatattgcttatgtgcctccgtgcaac--tctgtactgtaggacctgtcatcattttttcctgctcttgatccaactggtct |
10078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 23516 - 23810
Alignment:
| Q |
3 |
aaaacaggatttatttccccttttttattttcaatcaaaccaacaaagcctttttctatatatgaagaatgttcggcaccccaacagaggaaacatggcc |
102 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
23516 |
aaaacatgatttatttccccgtttttgttttcaatcgaaccaacaaagcctttttctatatatgaaaaatgtttgataccccaacagaggaaacatggcc |
23615 |
T |
|
| Q |
103 |
aggggtcactactttatgtgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaat--atatgagttatttttcacc |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
23616 |
-tgggtcactactttttgttctaaccttcaaacctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcacc |
23714 |
T |
|
| Q |
201 |
aattgtcctgttattggatcttgcttatgtgcctctgtgcaactgtgtgtactgtaggacctgtcatcaatttttcctccttttgatccaactggtct |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
23715 |
aattgtcctgttattggatattgcttatgtgcctccgtgcaac--tctgtactgtaggacctgtcatcattttttcctgctcttgatccaactggtct |
23810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 19839654 - 19839833
Alignment:
| Q |
30 |
ttttcaatcaaaccaacaaagcctttttctatatatgaagaatgttcggcaccccaacagaggaaacatggccaggggtcactactttatgtgctaacct |
129 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19839654 |
ttttcaatcaaaccaacaaatcctttttctatatatgaagaatcttttgtaccccaacagaggaaacatggccaggggtcactactttatatgctaacct |
19839753 |
T |
|
| Q |
130 |
tcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaatatatgagttatttttcaccaattgtcctgtta |
213 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
19839754 |
tcaaacctatcccaaatttaaaccaacggtacccaattctcacttct----taaatgagttatttttcaccaattgtcctgtta |
19839833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 12593150 - 12593009
Alignment:
| Q |
40 |
aaccaacaaagcctttttctatatatgaagaatgttcggcaccccaacagaggaaacatggccaggggtcactactttatgtgctaaccttcaaacctat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
12593150 |
aaccaacaaagcctttttctatatatgaagaatgtttggtaccccaacagaggaaacatggccaggggtcactactttatatgctaaccttcatacctat |
12593051 |
T |
|
| Q |
140 |
cccaaatttagaccaatggtaccaaattttcacttctcaaat |
181 |
Q |
| |
|
|||||||||| ||||| |||||| |||| ||||||||||||| |
|
|
| T |
12593050 |
cccaaatttaaaccaacggtacccaattctcacttctcaaat |
12593009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 30822696 - 30822636
Alignment:
| Q |
121 |
tgctaaccttcaaacctatcccaaatttagaccaatggtaccaaattttcacttctcaaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
|
|
| T |
30822696 |
tgctaaccttcaaacctatcccaaatttaaaccaacggtacccaattctcacttctcaaat |
30822636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 18553 - 18626
Alignment:
| Q |
136 |
ctatcccaaatttagaccaatggtaccaaattttcacttctcaaatatatgagttatttttcaccaattgtcctgtta |
213 |
Q |
| |
|
|||||| ||||| | ||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18553 |
ctatcctaaattaaaaccaacggtacccaattctcacttctcaaat----gagttatttttcaccaattgtcctgtta |
18626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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