View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_6 (Length: 646)
Name: NF2622_high_6
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 36696 - 36294
Alignment:
| Q |
1 |
aatttaaacatgcatctaattgagaaatttgattcactacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36696 |
aatttaaacatgcatctaattgagaaatttgatccactacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaa |
36597 |
T |
|
| Q |
101 |
agataaaaacgatgtaatcaaatttaaggtctttaatttaactctctcattgatcatcactattattaccttaaatgcgactaaaatgtgtccgagagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36596 |
agataaaaacgatgtaatcaaatttaaggtctttaatttaactctctcattgatcatcactattattaccttaaatgcgactaaaatgtgtccgagagta |
36497 |
T |
|
| Q |
201 |
cccaagatatatataaaagcaaagaaaattaagtttctttgagacacttgtctaagttgtcagacatgtgttacacaggtgtcatacgagtgtcgtacaa |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36496 |
tccaagatatatataaaagcaaagaaaactaagtttctttgagacacttgtctaagttgtcagacatgtgttacacaggtgtcatacgagtgtcgtacaa |
36397 |
T |
|
| Q |
301 |
ctaagatacgcctattctcaggacgcctaatcccaggagtatttgtaattatttaaaatgcaataacaaactcaaaatgatcacttcctaatcacaatta |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396 |
ctaagatacgcctattctcaggacgcctaatcccaagagtatttgtaattatttaaaatgcaataacaaactcaaaatgatcacttcctaatcacaatta |
36297 |
T |
|
| Q |
401 |
tta |
403 |
Q |
| |
|
||| |
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|
| T |
36296 |
tta |
36294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 473 - 523
Target Start/End: Complemental strand, 36224 - 36174
Alignment:
| Q |
473 |
gactcaccttcttaatggccacaagctcagaagtcacaacatgtgcccctg |
523 |
Q |
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| T |
36224 |
gactcaccttcttaatggccacaagctcagaagtcacaacatgtgcccctg |
36174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 39595881 - 39595813
Alignment:
| Q |
53 |
acaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaa |
121 |
Q |
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||||||||| ||||||||| | |||||||||||||| |||||| ||||| || ||| ||||||||||| |
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| T |
39595881 |
acaagatattatagtcttttaccttcatccatccatatactaccaaaaagctagaaatgatgtaatcaa |
39595813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 632
Target Start/End: Complemental strand, 36102 - 36073
Alignment:
| Q |
603 |
gtttcttataattcataccaatataaattt |
632 |
Q |
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|
| T |
36102 |
gtttcttataattcataccaatataaattt |
36073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 37268049 - 37267953
Alignment:
| Q |
36 |
actacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtct |
132 |
Q |
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|||| |||| || ||| ||||||||||||||||||| | |||||| |||| ||||||||| ||||| |||||| ||||||||||||||| |||| |
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| T |
37268049 |
actaaaaaagttctaaaacaagatatgatagtcttttaccttcattcatctatctactacctaaaagtaaaaaacattgtaatcaaatttaatgtct |
37267953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 10408238 - 10408317
Alignment:
| Q |
58 |
atatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctttaat |
137 |
Q |
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| T |
10408238 |
atatgatagccgttcaccttcatcgatccatctactactaaaaagctaaaactgatgtaatcaaatttaatgtctttaat |
10408317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 13085098 - 13085188
Alignment:
| Q |
42 |
aaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctt |
133 |
Q |
| |
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|||||| ||| ||||| ||||||||| ||||| |||||| | || |||||| || |||||| |||||| ||||||||||||||||| ||||| |
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| T |
13085098 |
aaaattctaaaacaaggtatgatagtttttaa-cttcattcttctatctaccaccgaaaagctaaaaatgatgtaatcaaatttaatgtctt |
13085188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 43222529 - 43222614
Alignment:
| Q |
53 |
acaagatatgatagtctttaagcttcatccatccatctacta--cggaaaagataaaaacgatgtaatcaaatttaaggtctttaa |
136 |
Q |
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|||| |||| ||||| ||| | |||||| ||||||||||||| | || ||| |||||| ||||||||||||||||| |||||||| |
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| T |
43222529 |
acaaaatattatagtttttcatcttcattcatccatctactataccgataagctaaaaatgatgtaatcaaatttaatgtctttaa |
43222614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 43416953 - 43416879
Alignment:
| Q |
41 |
aaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgt |
115 |
Q |
| |
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||||||| ||| ||||||||||||||||||| | |||| | |||| |||||||| |||||||||||| ||||| |
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| T |
43416953 |
aaaaattctaaaacaagatatgatagtctttcatcttcgttcatctatctactatcaaaaagataaaaatgatgt |
43416879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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