View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_high_64 (Length: 288)

Name: NF2622_high_64
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_high_64
NF2622_high_64
[»] scaffold1178 (1 HSPs)
scaffold1178 (20-203)||(2148-2331)
[»] chr6 (19 HSPs)
chr6 (16-203)||(14434467-14434654)
chr6 (35-144)||(20737823-20737932)
chr6 (209-273)||(34281623-34281687)
chr6 (16-115)||(4479704-4479803)
chr6 (209-266)||(29152400-29152457)
chr6 (153-204)||(4479821-4479872)
chr6 (210-274)||(29012542-29012606)
chr6 (210-274)||(32745188-32745252)
chr6 (210-272)||(25319604-25319666)
chr6 (210-272)||(26149297-26149359)
chr6 (217-274)||(32961062-32961119)
chr6 (209-273)||(29149027-29149091)
chr6 (217-272)||(29131014-29131069)
chr6 (210-273)||(34278778-34278841)
chr6 (210-274)||(29144997-29145061)
chr6 (217-273)||(29299780-29299836)
chr6 (217-272)||(23223694-23223749)
chr6 (210-264)||(29123817-29123871)
chr6 (210-274)||(29136962-29137026)
[»] chr2 (1 HSPs)
chr2 (97-203)||(30782278-30782384)
[»] chr8 (8 HSPs)
chr8 (16-115)||(32850446-32850545)
chr8 (16-115)||(32854741-32854840)
chr8 (16-115)||(37173589-37173688)
chr8 (16-115)||(37177880-37177979)
chr8 (153-203)||(32850563-32850613)
chr8 (153-203)||(37177997-37178047)
chr8 (153-203)||(32854858-32854908)
chr8 (153-203)||(37173706-37173756)
[»] chr3 (2 HSPs)
chr3 (16-115)||(39163826-39163925)
chr3 (153-203)||(39163943-39163993)
[»] scaffold0054 (2 HSPs)
scaffold0054 (210-274)||(40122-40186)
scaffold0054 (210-274)||(33771-33835)
[»] chr4 (2 HSPs)
chr4 (210-274)||(37897609-37897673)
chr4 (217-274)||(37895667-37895724)
[»] chr5 (4 HSPs)
chr5 (16-72)||(424302-424358)
chr5 (16-72)||(18113304-18113360)
chr5 (226-272)||(40548984-40549030)
chr5 (224-272)||(32642643-32642691)
[»] chr1 (2 HSPs)
chr1 (16-72)||(6154385-6154441)
chr1 (138-203)||(2009523-2009587)
[»] scaffold0134 (1 HSPs)
scaffold0134 (217-274)||(16545-16602)
[»] chr7 (6 HSPs)
chr7 (217-274)||(42446024-42446081)
chr7 (229-272)||(5393745-5393788)
chr7 (16-114)||(18414350-18414451)
chr7 (231-272)||(5442083-5442124)
chr7 (231-272)||(5451093-5451134)
chr7 (151-203)||(18414278-18414331)


Alignment Details
Target: scaffold1178 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 2148 - 2331
Alignment:
Q  20 cattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgaccctc 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||  ||    
T  2148 cattgcagtgccttgtcaatacatagaacctctagttatattgatgcatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgacattc 2247  T
Q  120 tctagaatttgcagatatatgaatggatttctagatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    ||| ||| || | |||| |||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2248 tctggaacttactgatacatgaatagacttttagatatattaaggaacctaggaatatggaaaattacaaattatcatttaaca 2331  T

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Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 14434654 - 14434467
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||| ||||||    
T  14434654 ttttcattgcagtgccttgtcaatacatagaacctctagttatattgatgcatagaaagttctagtaaatacgtgaatgcacctaggaatatttaatgac 14434555  T
Q  116 cctctctagaatttgcagatatatgaatggatttctagatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
      | | |  ||||| |||||| ||| |  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14434554 attttgtgtaatttacagatacatggagagacttctagatacattaatgaacctaggaatatggaaaattacaaattatcatttaaca 14434467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 20737823 - 20737932
Alignment:
Q  35 tcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgaccctctctagaatttgcaga 134  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| | || |||||||||||||||| ||||||| |||||||    
T  20737823 tcaatacatagaacctctagttatattgatgcatagaaagttctagtaaataagtgaatgcatccagtaatattaaatgaccctatctagaacttgcaga 20737922  T
Q  135 tatatgaatg 144  Q
    || |||||||    
T  20737923 tacatgaatg 20737932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 34281687 - 34281623
Alignment:
Q  209 cagaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34281687 cagaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccat 34281623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 4479704 - 4479803
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||| || | ||  ||||||||||||||||||||||||||| |||||||||||||    
T  4479704 tttttattgcagtgcgttgtcaatacatagaacctctagttatattgatacacaaaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 4479803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 29152400 - 29152457
Alignment:
Q  209 cagaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatat 266  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29152400 cagaagacggcatgtcaacatcaagttctctccacgagtcactccttaggctatatat 29152457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 4479821 - 4479872
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4479821 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaacaa 4479872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 29012606 - 29012542
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||| ||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||    
T  29012606 agaatacggcatgtcaacataaagttctctccacatgttacttcttaggctatatatctcccata 29012542  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 32745188 - 32745252
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    ||||| ||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  32745188 agaaggcggcatgtcaacatcaagtttcctccaggagttacttcttaggctatatatctcccata 32745252  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 25319604 - 25319666
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||    
T  25319604 agaagacggcatctcaatatcaagttttctccatgagttacttcttaggctatatatctccca 25319666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 26149297 - 26149359
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||||    
T  26149297 agaagacggcatctcaatatcaagttttctccatgagttacttcttaggctatatatctccca 26149359  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 32961062 - 32961119
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||||||||||||||||  |||||||||||||| |||| |||||||||||||||||    
T  32961062 ggcatgtcaacatcaagtttcctccacgagttacttcttacgctatatatctcccata 32961119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 29149027 - 29149091
Alignment:
Q  209 cagaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccat 273  Q
    ||||||||||||||||||||| || ||||||||| ||||||||  |||||||||| |||||||||    
T  29149027 cagaagacggcatgtcaacataaatttctctccatgagttactttttaggctatacatctcccat 29149091  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 29131069 - 29131014
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||||||||||||||||||||||| ||||||||  ||  |||||||||||||||    
T  29131069 ggcatgtcaacatcaagttctctccatgagttactttttgagctatatatctccca 29131014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 34278778 - 34278841
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccat 273  Q
    |||| |||||||| || ||||||||||||||||||| |||||  | ||||||||||||||||||    
T  34278778 agaatacggcatgacagcatcaagttctctccacgaattacttatcaggctatatatctcccat 34278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 29145061 - 29144997
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||| ||||||  |||||||||||  |||||| ||||||| ||||| ||||||||||||||||    
T  29145061 agaagatggcatgctaacatcaagtttcctccacaagttacttcttagactatatatctcccata 29144997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 29299836 - 29299780
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccat 273  Q
    |||||||||||||||||  || ||||||||| |||| |||||||||| |||||||||    
T  29299836 ggcatgtcaacatcaagcactttccacgagtcactcattaggctatacatctcccat 29299780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 23223694 - 23223749
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    ||||||||||| |||||||  |||||||||||| |  |||||||||||||||||||    
T  23223694 ggcatgtcaacgtcaagtttcctccacgagttaattgttaggctatatatctccca 23223749  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 29123871 - 29123817
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatat 264  Q
    ||||| |||||||||||||||||||   ||||| |||||||| ||||||||||||    
T  29123871 agaaggcggcatgtcaacatcaagtatcctccaagagttacttcttaggctatat 29123817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 29137026 - 29136962
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    ||||| |||||||||||| |||||||  ||| | |||||||| ||||||  ||||||||||||||    
T  29137026 agaaggcggcatgtcaacctcaagtttcctcgaggagttacttcttaggtcatatatctcccata 29136962  T

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Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 30782278 - 30782384
Alignment:
Q  97 cctagaaatattaaatgaccctctctagaatttgcagatatatgaatggatttctagatacattaaggaacctaggaatatggaaaattacaaattatca 196  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782278 cctaggaatattaaatgaccctctctagaacttgcagatacatgaatggatttctagatacattaaggaacctaggaatatggaaaattacaaattatca 30782377  T
Q  197 tttaaca 203  Q
    |||||||    
T  30782378 tttaaca 30782384  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 32850446 - 32850545
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  32850446 ttttcattgcagtgccttgtcaatacatagaacctctagttatattgatacatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 32850545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 32854741 - 32854840
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  32854741 ttttcattgcagtgccttgtcaatacatagaacctctagttatattgatacatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 32854840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 37173589 - 37173688
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  37173589 ttttcattgtagtgccttgtcaatacatagaacctctagttatattgatacatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 37173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 37177880 - 37177979
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  37177880 ttttcattgtagtgccttgtcaatacatagaacctctagttatattgatacatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 37177979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 32850563 - 32850613
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850563 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 32850613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 37177997 - 37178047
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37177997 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 37178047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 32854858 - 32854908
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32854858 gatacattaaggaacctaggaatatggaaaatttcaaattatcatttaaca 32854908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 37173706 - 37173756
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37173706 gatacattaaggaacctaggaatatgaaaaattacaaattatcatttaaca 37173756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 39163826 - 39163925
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagattctagtaaataagtgaatgcacctagaaatattaaatgac 115  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  39163826 ttttcattgtagttccttgtcaatacatagaacctctagttatattgatacatagaaagttctagtaaataagtgaatgcacctaggaatattaaatgac 39163925  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 39163943 - 39163993
Alignment:
Q  153 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39163943 gatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 39163993  T

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Target: scaffold0054 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 40122 - 40186
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40122 agaagatggcatgtcaatatcaagttttctccacgagttacttcttaggctatatatctcccata 40186  T

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Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 33771 - 33835
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||| |||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  33771 agaagatggcatgtcaatatcaagtttcctccacgagttacttcttaggctatatatctcccata 33835  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 37897673 - 37897609
Alignment:
Q  210 agaagacggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||    
T  37897673 agaagacggcatgtcaacatcaacttctctccacgagttacttcttaggatatatacctcccata 37897609  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 37895724 - 37895667
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||| | ||||||||    
T  37895724 ggcatgtcaacatcaagtttcctccacgaattacttcttaggctataaacctcccata 37895667  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 424302 - 424358
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaa 72  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  424302 ttttcattgcagtaccatgtcaatacatagaacctctagttatattgatgcatagaa 424358  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 18113304 - 18113360
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaa 72  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||| ||||||||    
T  18113304 ttttcattgcagtaccatgtcaatacataaaacctctagttatattgaagcatagaa 18113360  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 40549030 - 40548984
Alignment:
Q  226 acatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    ||||||||||  |||||||||||||| ||||||||||| ||||||||    
T  40549030 acatcaagtttcctccacgagttacttcttaggctataaatctccca 40548984  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 32642691 - 32642643
Alignment:
Q  224 caacatcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||||||||| |||||| |||||||| ||||  ||||||||||||||    
T  32642691 caacatcaagttttctccaagagttacttcttaaactatatatctccca 32642643  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 6154385 - 6154441
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaa 72  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  6154385 ttttcattgcagtaccatgtcaatacatagaacctctagttatattgatgcatagaa 6154441  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 2009587 - 2009523
Alignment:
Q  138 atgaatggatttctagatacattaaggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    ||||||| | |||||||||||||| ||||| |||||||||| |||||| | |||||||||||||||    
T  2009587 atgaatgaacttctagatacattagggaacttaggaatatgaaaaatttc-aattatcatttaaca 2009523  T

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Target: scaffold0134 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 16545 - 16602
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    ||||||||||| |||||||  ||||||||||||||  |||||||||||||||||||||    
T  16545 ggcatgtcaacgtcaagtttcctccacgagttacttgttaggctatatatctcccata 16602  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 42446081 - 42446024
Alignment:
Q  217 ggcatgtcaacatcaagttctctccacgagttactccttaggctatatatctcccata 274  Q
    |||||||||||||||||||  ||||||| |||||| ||||| ||||||||||||||||    
T  42446081 ggcatgtcaacatcaagtttcctccacgggttacttcttagactatatatctcccata 42446024  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 5393745 - 5393788
Alignment:
Q  229 tcaagttctctccacgagttactccttaggctatatatctccca 272  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||    
T  5393745 tcaagttttctccatgagttactccgtaggctatatatctccca 5393788  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 18414451 - 18414350
Alignment:
Q  16 ttttcattgcagtgccttgtcaatacataggacctctagttatattgatgcatagaagatt---ctagtaaataagtgaatgcacctagaaatattaaat 112  Q
    ||||||||||  |||| | ||||||||||| ||  ||| ||||||||||||||| ||  ||   |||||||||||||||||| | ||||||||||| |||    
T  18414451 ttttcattgctatgccctttcaatacatagaactactatttatattgatgcatataattttctactagtaaataagtgaatgaatctagaaatattgaat 18414352  T
Q  113 ga 114  Q
    ||    
T  18414351 ga 18414350  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 5442124 - 5442083
Alignment:
Q  231 aagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||| |||||||||||||| | ||||||||||||||||||    
T  5442124 aagttccctccacgagttacttcgtaggctatatatctccca 5442083  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 5451134 - 5451093
Alignment:
Q  231 aagttctctccacgagttactccttaggctatatatctccca 272  Q
    |||||| |||||||||||||| | ||||||||||||||||||    
T  5451134 aagttccctccacgagttacttcgtaggctatatatctccca 5451093  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 18414331 - 18414278
Alignment:
Q  151 tagatacattaa-ggaacctaggaatatggaaaattacaaattatcatttaaca 203  Q
    ||||||||| || |||||||||||||||| |||||| |||||||| ||||||||    
T  18414331 tagatacatgaatggaacctaggaatatgaaaaattgcaaattataatttaaca 18414278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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