View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_71 (Length: 270)
Name: NF2622_high_71
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_71 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 110746 - 110998
Alignment:
| Q |
18 |
cagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggtaa |
117 |
Q |
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| T |
110746 |
cagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggtaa |
110845 |
T |
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| Q |
118 |
atcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcgatt |
217 |
Q |
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| T |
110846 |
atcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcgatt |
110945 |
T |
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| Q |
218 |
ttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctactt |
270 |
Q |
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| T |
110946 |
ttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctactt |
110998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 48772296 - 48772453
Alignment:
| Q |
23 |
ccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg-------- |
114 |
Q |
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| T |
48772296 |
ccctttgaaggaatgaagtttacatcaattgaagatgtaaagaaatactacacaaggtacgcgaggaataaaggttttagctttcgtatgggtcgtgtta |
48772395 |
T |
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| Q |
115 |
-taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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| T |
48772396 |
ctaaatcaagaacggatggtagggtaattggtcaagagattctttgtttaaaggaggg |
48772453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 20647125 - 20646868
Alignment:
| Q |
18 |
cagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaag-----gttttagctttcgcatg |
112 |
Q |
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| T |
20647125 |
cagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtatagtataggttttagctttcgcatg |
20647026 |
T |
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| Q |
113 |
ggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatag |
212 |
Q |
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| T |
20647025 |
ggtaaatcaagaacaaatggtatgataattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggaaaataatag |
20646926 |
T |
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| Q |
213 |
cgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctactt |
270 |
Q |
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| T |
20646925 |
cgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctactt |
20646868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 19328966 - 19329124
Alignment:
| Q |
22 |
gccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggt------ |
115 |
Q |
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| T |
19328966 |
gccctttgaaggaattgagtttgtatcaattgaagatttaaaggattactataaaaggtatgcggggaacaaaggttttagtttccgtatgggttgtgtt |
19329065 |
T |
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| Q |
116 |
---aaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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| T |
19329066 |
actaaatcaagaacgaatggtatggtaattggtcaagagattctttgttcaaaggaggg |
19329124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 63830 - 63991
Alignment:
| Q |
19 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
63830 |
agagccctttgaaggaatggagtttgcatcaattgaagatgtaaaggattactacgtaaggtacgccaagaaaaaaggttttagttttcgcatgggtcgg |
63929 |
T |
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| Q |
115 |
-----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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| T |
63930 |
gttactaaatcaagaacgaatggtattgtgattggtcaagaaattctttgttcaaaggaggg |
63991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 22638868 - 22639028
Alignment:
| Q |
19 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
114 |
Q |
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|||||| | |||||||||||| ||||||||| | ||||||| ||| |||||||| ||| ||||| | || |||||||||||||||||| |||| |
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| T |
22638868 |
agagccgtatgaaggaatggattttgcatcattcgaagatgcaaaaaattactatacaagttatgcaaggaagaaaggttttagctttcgcttgggcgta |
22638967 |
T |
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| Q |
115 |
----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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| T |
22638968 |
ttattaaatcaagaacaaatggattgataattggtcaggagattctttgttcaaaggaggg |
22639028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 16080189 - 16080351
Alignment:
| Q |
19 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
114 |
Q |
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||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||| || || | || |||||||||||||||||| ||||| |
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| T |
16080189 |
agagccctttgaatgaatggagtttacatcaattgaagatgtaaagaaatactacacaaggtacgcgaggaataaaggttttagctttcgtatgggtcgt |
16080288 |
T |
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| Q |
115 |
-----taaatcaagaacaaatggtatggt-aattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||| ||||||| |||||||| |
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| T |
16080289 |
gttactaaatcaagaacggatggtagggtaaattggtcaagagattctttgttctaaggaggg |
16080351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 38590376 - 38590228
Alignment:
| Q |
28 |
tgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggt---------aaa |
118 |
Q |
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| T |
38590376 |
tgaaggaacggattttgcatcatttgaagatgcaaagaattactatacaaggtacgcaaggaacaaaggttttagctttcgcttgggtcgtattactaaa |
38590277 |
T |
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| Q |
119 |
tcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaagg |
167 |
Q |
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||||||||| |||| || |||||||||| |||||| |||||||||||| |
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| T |
38590276 |
tcaagaacagatggattgataattggtcaggagattctttgttcaaagg |
38590228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 44886212 - 44886051
Alignment:
| Q |
19 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
114 |
Q |
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||||||| ||||||||||||| ||| |||| ||||||| | ||||| ||||||| ||| || || ||| ||||||||||| || |||||||| |
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| T |
44886212 |
agagcccattgaaggaatggagtttaaatcatttgaagaggcaaagagttactacacaaggtacgctcagaacaaaggttttagtttccgcatgggccgt |
44886113 |
T |
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| Q |
115 |
-----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
171 |
Q |
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||| ||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
44886112 |
gttactaagtcaagaacaaacggtatgataattggtcaagaaattctttgttcaaaggaggg |
44886051 |
T |
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Back To:
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