View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_72 (Length: 269)
Name: NF2622_high_72
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_72 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 46843928 - 46844175
Alignment:
| Q |
6 |
acaactcatatatttgataattgcataattgagagtagttgttttgatattggatgctctgctgttaaagagaatgggtattgttttcctcaccctacca |
105 |
Q |
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| T |
46843928 |
acaactcatatatttgataattgcataattgagagtagttgttttgatattggatgctctgctgttaaagagaatgggtattgttttcctcaccctacca |
46844027 |
T |
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| Q |
106 |
gctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggtaattgcttattctttt |
205 |
Q |
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| T |
46844028 |
gctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggtaattgcttattctttt |
46844127 |
T |
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| Q |
206 |
accccctagggatgataacatgcaccgaggcaaaactggacacggcac |
253 |
Q |
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| T |
46844128 |
accccctagggatgataacatgcaccgaggcaaaactggacacggcac |
46844175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 46847912 - 46848029
Alignment:
| Q |
90 |
tttcctcaccctaccagctatccctctgagagctttctgagtgtatgttttcactgcaagaagaatcttgagcagggtaaagacatctacatgtacaggt |
189 |
Q |
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| T |
46847912 |
tttcctcatcctattagatatccctctgaaatctttttgagtatatgtttccaatgcaagaagagtctt---cagggaaaagatatctacatgtacaggt |
46848008 |
T |
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| Q |
190 |
aattgcttattcttttacccc |
210 |
Q |
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| T |
46848009 |
aattgcttattctttaacccc |
46848029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 28230 - 28151
Alignment:
| Q |
55 |
ttggatgctctgct---gttaaagagaatgggtattgttttcctcaccctaccagctatccctctgagagctttctgagt |
131 |
Q |
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| T |
28230 |
ttggatgctctgcttctgttaaagaaaatgggtatggttttcttcatcgtactagtcatccctctgagagctttttgagt |
28151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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