View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_76 (Length: 255)
Name: NF2622_high_76
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_76 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 19701968 - 19702224
Alignment:
| Q |
1 |
gttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaaaaatggaagcgctta |
100 |
Q |
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| T |
19701968 |
gttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaaaaatggaagcgctta |
19702067 |
T |
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| Q |
101 |
ttgcttttaagaattgagctggcttaaatgcatgaactgtatccacagctgagtgacctcttatcccatggattaaacaaccacttcacgataaaacagg |
200 |
Q |
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| T |
19702068 |
ttgcttttaagaattgggctggcttaaatgcatgaactgtatccacagctgagtgacctcttatcccatggattaaacaaccacttcaggataaaacaga |
19702167 |
T |
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| Q |
201 |
att--tctctctctcgccgtcggtattgaatccgtgctggttggtcttactggtctt |
255 |
Q |
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| T |
19702168 |
atttctctctctctcgccgtcgctattgaatccgtgactgttggtcttaccggtctt |
19702224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20014647 - 20014430
Alignment:
| Q |
1 |
gttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaaaaatggaagcgctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20014647 |
gttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaaaaatggaagctctta |
20014548 |
T |
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| Q |
101 |
ttgcttttaagaattgagctggcttaaatgcatgaactgtatccacagctgagtgacctcttatcccatggattaaacaaccacttcacgataaaaca-g |
199 |
Q |
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| T |
20014547 |
ttgctttcaagaattgggctggcttaaatgcgtgaactgtatgcactggtgagggacctcttatctcacagactaaacaaccacttcaggataaaacatg |
20014448 |
T |
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| Q |
200 |
gatttctctctctcgccg |
217 |
Q |
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| T |
20014447 |
aatttctctctcttgccg |
20014430 |
T |
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