View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_81 (Length: 250)
Name: NF2622_high_81
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_81 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 52429442 - 52429206
Alignment:
| Q |
11 |
cacagaccaagtttctctgaccaaattcgacataaatggtccctcaaattaggttcccaaagacaaaaattcccatggcaagaacaacaacaacaaaaac |
110 |
Q |
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| T |
52429442 |
cacagaccaagtttctctgaccaaattcgacataaatggtccctcaaattaggttcccaaagacaaaaattcccatggcaagaacaacaacaacaa---c |
52429346 |
T |
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| Q |
111 |
aagaggaaccagaactagtggaacaacctcaatcccaagaggaacaaccacaacctctgaattttgagtttccaaagcgtttatctccttggcacgtggc |
210 |
Q |
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| T |
52429345 |
aagaggaaccagaactagtggaacaacctcaatcccaagaggaacaaccacaacctctgaattttgagtttccaaagcgtttatctccttggcacgtggc |
52429246 |
T |
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| Q |
211 |
agaaagccctaaacaacaatcacagtttcattctgaatct |
250 |
Q |
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| T |
52429245 |
agaaagccctaaacaacaatcacagtttcattctgaatct |
52429206 |
T |
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