View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_86 (Length: 248)
Name: NF2622_high_86
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_86 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 27514020 - 27513835
Alignment:
| Q |
4 |
aatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagt |
103 |
Q |
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| T |
27514020 |
aatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagt |
27513921 |
T |
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| Q |
104 |
cgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
191 |
Q |
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| T |
27513920 |
cgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
21 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
116 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
117 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
167 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 27513807 - 27513760
Alignment:
| Q |
201 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaagaccttg |
248 |
Q |
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| T |
27513807 |
atttctgtgttgtcgtagcttccagagaagaaggtgccgaagaccttg |
27513760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 8675102 - 8675145
Alignment:
| Q |
201 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaagac |
244 |
Q |
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| T |
8675102 |
atttctgtgttgttgtagcctccggagaagaaggtgccgaagac |
8675145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 39209906 - 39210040
Alignment:
| Q |
96 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn |
195 |
Q |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga--tt |
39210003 |
T |
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| Q |
196 |
nnnnnatttctgtgttgttgtagcttccagagaagaa |
232 |
Q |
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| T |
39210004 |
tttttatttctgtgttgttgtagcttccatagaagaa |
39210040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
24 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
119 |
Q |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
120 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
167 |
Q |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39209843 - 39209911
Alignment:
| Q |
1 |
cgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
69 |
Q |
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| T |
39209843 |
cgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 24036978 - 24036937
Alignment:
| Q |
202 |
tttctgtgttgttgtagcttccagagaagaaggtgccgaaga |
243 |
Q |
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| T |
24036978 |
tttctgtgttgttgtagcttccggagaaaaagctgccgaaga |
24036937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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