View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_high_93 (Length: 244)
Name: NF2622_high_93
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_high_93 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 45391171 - 45390948
Alignment:
| Q |
2 |
aagaaagaagaaaccaagccagaagaaacaaaagatgaagctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaa |
101 |
Q |
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| T |
45391171 |
aagaaagaagaaaccaagccagaggaaacaaaagatgaagctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaa |
45391072 |
T |
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| Q |
102 |
gctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391071 |
gctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaa |
45390972 |
T |
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| Q |
202 |
agcggagccattgaaggttttgga |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
45390971 |
agcggagccattgaaggttttgga |
45390948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45386803 - 45386579
Alignment:
| Q |
1 |
aaagaaagaagaaaccaagccagaagaaacaaaagatgaagctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaa |
100 |
Q |
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|||| ||||||||||||||||||| |||| ||||||||||||||||| || | || ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
45386803 |
aaaggaagaagaaaccaagccagaggaaagaaaagatgaagctgctgcaactccaccgcctccagcagagattttgctgagagttttcatgcattgtgaa |
45386704 |
T |
|
| Q |
101 |
agctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagaga |
200 |
Q |
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| T |
45386703 |
ggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaaggagaga |
45386604 |
T |
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| Q |
201 |
aagcggagccattgaaggttttgga |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
45386603 |
aagcagagccattgaaggttttgga |
45386579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 734779 - 734556
Alignment:
| Q |
2 |
aagaaagaagaaaccaagccagaagaaacaaaagatgaagctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaa |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734779 |
aagaaagaagaaaccaagccagaggaaacaaaagatgaagctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaa |
734680 |
T |
|
| Q |
102 |
gctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
734679 |
gctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtgatagctgattgcaagtctcatacggtggttgtgaaaggagagaa |
734580 |
T |
|
| Q |
202 |
agcggagccattgaaggttttgga |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
734579 |
agcggagccattgaaggttttgga |
734556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 40578088 - 40578002
Alignment:
| Q |
134 |
gattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggtt |
220 |
Q |
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|||||| |||| |||||||| ||| | ||||||||||| ||||| | ||| |||| |||||||| |||||||| |||||||||||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggtt |
40578002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
75 |
tgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
145 |
Q |
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|||| ||||| ||||||||||||||| | |||||||| ||||||||||| || | |||| |||||||||| |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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