View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_1 (Length: 889)

Name: NF2622_low_1
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_1
NF2622_low_1
[»] chr3 (1 HSPs)
chr3 (20-836)||(31379989-31380806)


Alignment Details
Target: chr3 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 20 - 836
Target Start/End: Complemental strand, 31380806 - 31379989
Alignment:
Q  20 atctagatgatttttctctcttcctctctctcgtgatttctcactggttttgtgaaacccttcgtcgaaaatgttattttatttcgttatacgttttgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31380806 atctagatgatttttctctcttcctctctctcgtgatttctcactggttttgtgaaacccttcgtcgaaaatgttattttatttcgttatacgttttgtt 31380707  T
Q  120 gtgtaaaaaacaaa-taggcctaagatgaaggcccaattaaaatctaattaaattttaggaaattgctcttttgcaccccctaccaattatgctcaca-- 216  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31380706 gtgtaaaaaaaaaaataggcctaagatgaaggcccaattaaaatctaattaaattttaggaaattgctcttttgcaccccctaccaattatgctcacaca 31380607  T
Q  217 tgccctctacaaaacctaaaataacatccattagaagttatgttccgatagtattggaagatagcttctgataaacaaaacaatggatttgttgaaaacg 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  31380606 tgccctctacaaaacctaaaataatatccattagaagttatgttccgatagtattggaagatagcttctgataaaaaatacaacggatttgttgaaaacg 31380507  T
Q  317 gaagttatcttgcgataagcatataacgtggaaaataaaaatatcagatctaacttttgttctgttccagtttgatattaaagttcatcagaagataact 416  Q
    ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||||| | |||||||||||||||||||||    
T  31380506 gaagttatcttgcaataagcatataacgtggaaaatacaaacatcagatctaactttcgttatattccagtttgatttcaaagttcatcagaagataact 31380407  T
Q  417 ttggattggtcgatatattgattctttaaccgttttttcatgacataggtattcagcatgattcataaacaacggacatataaatcaagacacgatgtca 516  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||    
T  31380406 ttggattggtcgatatattgattctttaaccgttttt-catgacataggtattca---tgattcataaacaacggacatataaaccaagacacgatgtca 31380311  T
Q  517 caatggtcatataaaccaaaacataaagtcaatataatactgagagacgagttcaatataaaccataatggtattaaatctcaaaatacatatccacaca 616  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31380310 caatggtcatataaaccaagacataaagtcaatataatattgagagacaagttcaatataaaccataatggtattaaatctcaaaataaatatccacaca 31380211  T
Q  617 caaatgtatgtatccaaaatacatcatttgtaaacaattgtacctttccagtaaccaatatcgtgttcattagcaaaaaacatgaaaataaaattataac 716  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31380210 caaatgtatgtatccaaaatacatcattcgtaaacaattgtacctttccagaaaccaatatcgtgttcattagcaaaaaacatgaaaataaaattataac 31380111  T
Q  717 tactgagggactataaaactcttacgtata---ctcacttgatattgggagacaaatgnnnnnnnngtgacaatgtcttaaagagtggcatttagaggat 813  Q
    ||| |||||||||| |||||||| ||||||   ||||||||||||   ||||||| ||        ||||||||||||||| ||||||||||||||||||    
T  31380110 taccgagggactatgaaactctttcgtatacacctcacttgatatcatgagacaagtggtgtttttgtgacaatgtcttaacgagtggcatttagaggat 31380011  T
Q  814 attttgcccattctacactaata 836  Q
    | |||||||||||||||||||||    
T  31380010 a-tttgcccattctacactaata 31379989  T

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